Factsheet for Solyc03g119770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014572	Potato	nucleus	82.37	75.4
VIT_17s0000g04180.t01	Wine grape	nucleus	32.37	30.6
Solyc02g065800.1.1	Tomato	cytosol, plastid	12.14	29.58
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	19.94	28.63
Solyc06g069240.1.1	Tomato	nucleus	32.95	28.08
Solyc03g045030.1.1	Tomato	nucleus	14.16	26.78
KRH63057	Soybean	nucleus	28.32	25.45
KRH54810	Soybean	nucleus	28.9	25.25
CDY18525	Canola	nucleus	20.52	25.09
KRH56692	Soybean	nucleus	27.17	25.0
Bra037579.1-P	Field mustard	nucleus	20.52	24.91
KRH03810	Soybean	nucleus	27.17	24.74
CDX95517	Canola	nucleus	20.23	24.73
TraesCS5D01G002300.1	Wheat	nucleus	17.92	23.48
TraesCS5A01G001900.1	Wheat	nucleus	18.21	23.08
TraesCS5B01G002300.1	Wheat	nucleus	18.5	21.69
HORVU5Hr1G000490.1	Barley	nucleus	18.21	21.21
Solyc04g006980.1.1	Tomato	nucleus	22.83	21.07
Solyc10g018710.1.1	Tomato	nucleus	10.4	21.05
Solyc05g009900.1.1	Tomato	nucleus	20.52	20.11
CDY62798	Canola	nucleus	22.83	19.22
TraesCS4D01G040100.1	Wheat	nucleus	19.36	19.03
TraesCS4B01G042700.1	Wheat	nucleus	19.36	18.93
TraesCS4A01G271300.1	Wheat	nucleus	19.08	18.75
AT3G18550.3	Thale cress	nucleus	23.41	18.66
CDY52898	Canola	nucleus	22.83	18.59
CDX82339	Canola	nucleus	22.54	18.4
Bra001710.1-P	Field mustard	nucleus	22.54	18.35
HORVU4Hr1G007040.1	Barley	nucleus	18.79	18.21
Solyc05g012840.1.1	Tomato	nucleus	11.56	17.94
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	18.79	17.76
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	19.36	17.63
Zm00001d013467_P001	Maize	nucleus	17.92	17.27
Solyc07g053410.2.1	Tomato	cytosol	12.14	17.21
Os03t0706500-01	Rice	nucleus	19.08	17.01
Solyc11g045640.1.1	Tomato	nucleus	10.69	16.89
Solyc08g048370.2.1	Tomato	cytosol	15.9	16.87
Solyc05g032780.1.1	Tomato	nucleus	9.83	16.04
Solyc02g089020.1.1	Tomato	nucleus, plastid	12.14	14.79
Solyc08g048390.1.1	Tomato	nucleus	16.47	14.73
Solyc07g062680.1.1	Tomato	nucleus	15.9	13.75
Solyc06g069460.1.1	Tomato	plastid	10.98	13.67
Solyc03g115010.1.1	Tomato	plastid	13.01	13.2
Solyc12g014140.1.1	Tomato	nucleus	13.87	12.18
Solyc02g077250.2.1	Tomato	nucleus	12.14	11.86
Solyc10g008780.1.1	Tomato	nucleus	13.87	8.25

Protein Annotations

MapMan:15.5.19	ProteinID:AEF98452.1	InterPro:CYC/TB1_R_domain	UniProt:F6KB98	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370
PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	EnsemblPlantsGene:Solyc03g119770.2	EnsemblPlants:Solyc03g119770.2.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI0002117895	SEG:seg	:	:	:	:

Description

BRANCHED1A isoform 1 [Source:UniProtKB/TrEMBL;Acc:F6KB98]

Coordinates

chr3:+:68328860..68329992

Molecular Weight (calculated)

39327.3 Da

IEP (calculated)

8.996

GRAVY (calculated)

-0.997

Length

346 amino acids

Sequence
(BLAST)

001: MYPSSNYSPN ISSSSSFFHI NIPSPSMQYE PEFIQYFHDF QFIQPSYDQN TNIPAEEAAD SDKLDKIEED QSIIKSCNNN KKDEKSSSST STIRRKNNKR
101: TTSGSAGVGP SKKDRHSKIN TAHGPRDRRM RLSLEIARKF FNLQDLLGFD KASKTVEWLL TKSKSAVNDL VQKINKDKCS GSENPNIATV SSPSAESCEV
201: IDESAATNTA ETQKQQKKKV KSIRRAIIHP VVAKESRKEA RARARERTII KKSLNDNTNN NNNGDQSMAD EDLTRSLRSW NTTFEDHQSG IQGYNNNNNM
301: NVVDNFNLVD TSNWSPFMFN YHQINTEISQ EHQFANFQYS GKLWEA

Best Arabidopsis Sequence Match ( AT3G18550.4 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.