Factsheet for Solyc06g069240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010380	Potato	nucleus	57.88	84.23
Solyc03g119770.2.1	Tomato	nucleus	28.08	32.95
Solyc03g045030.1.1	Tomato	nucleus	13.3	29.51
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	16.5	27.8
VIT_17s0000g04180.t01	Wine grape	nucleus	24.88	27.6
Solyc02g065800.1.1	Tomato	cytosol, plastid	9.61	27.46
CDX95517	Canola	nucleus	18.23	26.15
CDY18525	Canola	nucleus	18.23	26.15
TraesCS5D01G002300.1	Wheat	nucleus	17.0	26.14
TraesCS5A01G001900.1	Wheat	nucleus	17.49	26.01
Bra037579.1-P	Field mustard	nucleus	18.23	25.96
KRH03810	Soybean	nucleus	22.91	24.47
KRH63057	Soybean	nucleus	23.15	24.42
TraesCS5B01G002300.1	Wheat	nucleus	17.73	24.41
HORVU5Hr1G000490.1	Barley	nucleus	17.73	24.24
KRH56692	Soybean	nucleus	22.17	23.94
KRH54810	Soybean	nucleus	22.66	23.23
TraesCS4D01G040100.1	Wheat	nucleus	19.95	23.01
TraesCS4B01G042700.1	Wheat	nucleus	19.7	22.6
TraesCS4A01G271300.1	Wheat	nucleus	19.46	22.44
HORVU4Hr1G007040.1	Barley	nucleus	19.46	22.13
Solyc04g006980.1.1	Tomato	nucleus	20.2	21.87
Solyc05g009900.1.1	Tomato	nucleus	18.97	21.81
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	20.2	21.58
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	19.21	21.31
Os03t0706500-01	Rice	nucleus	19.7	20.62
Zm00001d013467_P001	Maize	nucleus	18.23	20.61
AT3G18550.3	Thale cress	nucleus	21.67	20.28
CDX82339	Canola	nucleus	20.94	20.05
Bra001710.1-P	Field mustard	nucleus	20.94	20.0
Solyc10g018710.1.1	Tomato	nucleus	8.37	19.88
CDY52898	Canola	nucleus	20.69	19.76
CDY62798	Canola	nucleus	19.46	19.22
Solyc07g053410.2.1	Tomato	cytosol	10.34	17.21
Solyc05g012840.1.1	Tomato	nucleus	9.11	16.59
Solyc02g089020.1.1	Tomato	nucleus, plastid	11.58	16.55
Solyc08g048370.2.1	Tomato	cytosol	12.81	15.95
Solyc11g045640.1.1	Tomato	nucleus	8.37	15.53
Solyc06g069460.1.1	Tomato	plastid	10.1	14.75
Solyc08g048390.1.1	Tomato	nucleus	14.04	14.73
Solyc05g032780.1.1	Tomato	nucleus	7.64	14.62
Solyc12g014140.1.1	Tomato	nucleus	12.81	13.2
Solyc07g062680.1.1	Tomato	nucleus	12.81	13.0
Solyc03g115010.1.1	Tomato	plastid	10.59	12.61
Solyc02g077250.2.1	Tomato	nucleus	9.61	11.02
Solyc10g008780.1.1	Tomato	nucleus	11.08	7.73

Protein Annotations

MapMan:15.5.19	InterPro:CYC/TB1_R_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
InterPro:IPR017888	UniProt:K4C897	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072
PANTHER:PTHR31072:SF41	EnsemblPlantsGene:Solyc06g069240.1	EnsemblPlants:Solyc06g069240.1.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002766963
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:43006781..43008127

Molecular Weight (calculated)

45631.3 Da

IEP (calculated)

8.648

GRAVY (calculated)

-0.863

Length

406 amino acids

Sequence
(BLAST)

001: MYPPSNNNCS PILSSLICQN IPSSPCMQYE HELYFQSFNH DNQYYFQQQQ LVPSIDDLSP HILADSCTEI ITKPSNCNHE LQGMEEGRGE KKGDDDVMSS
101: RISGRISKNN KRSSNKDRHS KINTARGPRD RRMRLSLDAA RKFFRLQDLL GFDKASKTVE WLLTQSDSAI EELVAAKGND AQVAQQTSCN TPTTTTGIGA
201: ICASNSISES CEVISGTDET SSNDKNKETA QDEEKKKRKK VVNTARRAVL EPLTKESRNQ ARARARERTK SKKMSQTGKS KSLANDLNPS GSRRPANKTC
301: EEPGTHEELN FHQEKNTVDD CNFMVNGNWN PFTIFSYHEQ YAGISNETCN FVESYGKARA RNFEADKVPS SFCAGNSKRI KFLLHFVLTR PQQKNVSGLY
401: LLVNVT

Best Arabidopsis Sequence Match ( AT3G18550.3 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.