Factsheet for VIT_17s0000g04180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010380	Potato	nucleus	27.05	35.48
KRH56692	Soybean	nucleus	36.34	35.37
KRH03810	Soybean	nucleus	35.52	34.21
KRH63057	Soybean	nucleus	34.7	32.99
VIT_14s0083g00150.t01	Wine grape	nucleus	29.51	32.73
Solyc03g119770.2.1	Tomato	nucleus	30.6	32.37
VIT_01s0011g02920.t01	Wine grape	nucleus	38.52	32.19
KRH54810	Soybean	nucleus	33.33	30.81
PGSC0003DMT400014572	Potato	nucleus	29.78	28.84
CDX95517	Canola	nucleus	20.22	26.15
CDY18525	Canola	nucleus	19.95	25.8
Bra037579.1-P	Field mustard	nucleus	19.95	25.61
Solyc06g069240.1.1	Tomato	nucleus	27.6	24.88
TraesCS5D01G002300.1	Wheat	nucleus	15.3	21.21
TraesCS4B01G042700.1	Wheat	nucleus	20.22	20.9
TraesCS5A01G001900.1	Wheat	nucleus	15.57	20.88
TraesCS4A01G271300.1	Wheat	nucleus	19.95	20.74
TraesCS4D01G040100.1	Wheat	nucleus	19.95	20.74
HORVU4Hr1G007040.1	Barley	nucleus	20.22	20.73
CDY62798	Canola	nucleus	22.68	20.19
CDY52898	Canola	nucleus	23.22	20.0
TraesCS5B01G002300.1	Wheat	nucleus	15.85	19.66
CDX82339	Canola	nucleus	22.68	19.58
Bra001710.1-P	Field mustard	nucleus	22.68	19.53
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	19.95	19.21
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	18.58	18.58
HORVU5Hr1G000490.1	Barley	nucleus	15.03	18.52
AT3G18550.3	Thale cress	nucleus	21.86	18.43
Zm00001d013467_P001	Maize	nucleus	17.76	18.11
Os03t0706500-01	Rice	nucleus	19.13	18.04
VIT_12s0028g02520.t01	Wine grape	nucleus	15.03	17.92
VIT_14s0068g00330.t01	Wine grape	nucleus	16.67	17.48
VIT_10s0003g03910.t01	Wine grape	nucleus	16.67	13.74
VIT_10s0003g00870.t01	Wine grape	nucleus	14.21	13.61
VIT_19s0014g01680.t01	Wine grape	nucleus	14.48	13.32

Protein Annotations

MapMan:15.5.19	ProteinID:CBI15411	ProteinID:CBI15411.3	InterPro:CYC/TB1_R_domain	UniProt:D7SIV0	EMBL:FN594950
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	PFAM:PF03634
PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF22	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI0001BE0C2E	ArrayExpress:VIT_17s0000g04180	EnsemblPlantsGene:VIT_17s0000g04180	EnsemblPlants:VIT_17s0000g04180.t01	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:4343550..4345620

Molecular Weight (calculated)

41573.0 Da

IEP (calculated)

8.971

GRAVY (calculated)

-0.757

Length

366 amino acids

Sequence
(BLAST)

001: MEIGIHANSL ACARLRCPGA IFQPQMFLSN SNGNNPISYP DQTILHAPFI TDVSHNSQQE DPPSSFFYFP SPFIHYEDDA FLQHNDLIPQ LQALMPGDTL
101: ADTMVNMVNS NKNSNELIGD RKQSNSVTEP IMQKRSSKRD RHSKINTARG PRDRRMRLSL EIARKFFDLQ DMLGFDKASK TVEWLLIKAK SAIKELSRGG
201: SISKGKRSKC LTKERKTRQS RKNAFQPLAR ESREKARARA RERTREKMWS RRLDESKVCA EANSHDLNHL GSISSFETGE ESGSQSHNLI PSLELLPEVE
301: EPSSNEQHHS GITEAMLDNS LVIMSKQWSP SSIFNYLNFG ISQEPQFPGF QFHGKPWEAH SNQNLC

Best Arabidopsis Sequence Match ( AT1G68800.1 )
(BLAST)

001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGMSTPREH NTTSIATVDE EKSPISSFSL YDYLCY

Arabidopsis Description

BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.