Factsheet for VIT_14s0068g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003453	Potato	nucleus, plastid	43.27	53.36
Solyc02g089020.1.1	Tomato	nucleus, plastid	42.41	52.11
KRH45058	Soybean	nucleus	52.72	51.83
KRH01308	Soybean	cytosol	52.72	47.92
KRG93654	Soybean	nucleus	49.86	46.52
Bra039158.1-P	Field mustard	nucleus	36.96	41.75
CDX74272	Canola	nucleus	36.39	39.69
CDX91977	Canola	nucleus	36.39	39.69
AT3G02150.2	Thale cress	nucleus	38.11	37.46
Zm00001d010730_P001	Maize	cytosol, plastid	29.51	37.45
EES18493	Sorghum	cytosol	31.81	37.25
Os05t0513100-01	Rice	nucleus	31.23	37.07
EES03657	Sorghum	nucleus	30.37	36.68
Zm00001d038683_P001	Maize	cytosol	31.23	36.58
TraesCS3D01G298900.1	Wheat	nucleus	28.37	36.0
HORVU3Hr1G073830.1	Barley	nucleus	28.65	35.97
TraesCS3A01G302900.1	Wheat	nucleus	28.65	35.97
TraesCS3B01G333400.1	Wheat	nucleus	28.65	35.71
Zm00001d043368_P001	Maize	cytosol	28.94	35.69
HORVU1Hr1G077080.1	Barley	nucleus	29.23	34.93
Os01t0763200-01	Rice	cytosol	30.66	34.85
TraesCS1A01G332600.1	Wheat	nucleus	30.09	34.31
TraesCS1B01G346300.1	Wheat	nucleus	29.8	33.77
TraesCS1D01G335300.1	Wheat	nucleus	29.8	33.23
CDY60475	Canola	endoplasmic reticulum, golgi	36.68	32.24
CDY43255	Canola	endoplasmic reticulum, golgi	36.96	30.07
Bra001032.1-P	Field mustard	nucleus	36.68	23.79
VIT_12s0028g02520.t01	Wine grape	nucleus	18.05	20.52
VIT_10s0003g03910.t01	Wine grape	nucleus	24.93	19.59
VIT_19s0014g01680.t01	Wine grape	nucleus	21.49	18.84
VIT_10s0003g00870.t01	Wine grape	nucleus	19.48	17.8
VIT_14s0083g00150.t01	Wine grape	nucleus	16.05	16.97
VIT_17s0000g04180.t01	Wine grape	nucleus	17.48	16.67
VIT_01s0011g02920.t01	Wine grape	nucleus	16.62	13.24

Protein Annotations

EntrezGene:100263410	wikigene:100263410	MapMan:15.5.19	EMBL:AM486098	ProteinID:CAN79810	ProteinID:CAN79810.1
ProteinID:CCB46934	ProteinID:CCB46934.1	UniProt:F6H492	EMBL:FN595232	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	EntrezGene:LOC100263410	wikigene:LOC100263410	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00015C8BFC	ArrayExpress:VIT_14s0068g00330
EnsemblPlantsGene:VIT_14s0068g00330	EnsemblPlants:VIT_14s0068g00330.t01	RefSeq:XP_002277074	RefSeq:XP_002277074.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:24046880..24048369

Molecular Weight (calculated)

38625.6 Da

IEP (calculated)

9.017

GRAVY (calculated)

-0.573

Length

349 amino acids

Sequence
(BLAST)

001: MTTSSREADF SAKLEGDESD ARIAKNSSTS TPWLRLKDPR IVRVSRAYGG KDRHSKVCTV RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA
101: AKHEIDELPP LQMPPGNFVQ SHQPMITSLE VGASQFNKEE LKISNGIDWE DPSGLPRSSF WGSNAFLRAK SKEVPRENVN EKVNWMKRNE EGGQVSSNIF
201: PPRTNQSSLP GLLSSSMPYG PYYHLEPSNL SLSTLGSHGL TSQTEDLHNF SVVPLPSSLS LTSGSQVLVC PPGATQSYFP PHVPTSMEFD PRQINHFQLL
301: SSSSQNILPN ALTPPLYSIG QPVRPLHLSM AHKIHHSQSI NGGHPNKDS

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.