CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043368_P001	Maize	cytosol	87.2	89.05
TraesCS3D01G298900.1	Wheat	nucleus	65.05	68.36
TraesCS3A01G302900.1	Wheat	nucleus	65.4	67.99
TraesCS3B01G333400.1	Wheat	nucleus	64.71	66.79
Os01t0763200-01	Rice	cytosol	70.59	66.45
HORVU3Hr1G073830.1	Barley	nucleus	63.67	66.19
EES18493	Sorghum	cytosol	52.6	51.01
Solyc02g065800.1.1	Tomato	cytosol, plastid	23.88	48.59
OQU89064	Sorghum	cytosol	11.42	41.25
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	26.99	35.78
PGSC0003DMT400003453	Potato	nucleus, plastid	31.14	31.8
Solyc02g089020.1.1	Tomato	nucleus, plastid	31.14	31.69
VIT_14s0068g00330.t01	Wine grape	nucleus	36.68	30.37
KRH45058	Soybean	nucleus	34.6	28.17
KRG93654	Soybean	nucleus	35.64	27.54
KRH01308	Soybean	cytosol	35.64	26.82
CDX91977	Canola	nucleus	29.41	26.56
CDX74272	Canola	nucleus	29.41	26.56
Bra039158.1-P	Field mustard	nucleus	28.37	26.54
AT3G02150.2	Thale cress	nucleus	28.72	23.38
CDY60475	Canola	endoplasmic reticulum, golgi	28.72	20.91
CDY43255	Canola	endoplasmic reticulum, golgi	28.72	19.35
KXG37409	Sorghum	cytosol	25.26	18.77
EES16387	Sorghum	cytosol, nucleus, plastid	19.38	18.54
EES13882	Sorghum	cytosol	15.22	17.12
EER96723	Sorghum	nucleus	14.53	15.67
EER95875	Sorghum	cytosol, nucleus, peroxisome	24.91	15.62
Bra001032.1-P	Field mustard	nucleus	29.07	15.61
KXG33398	Sorghum	nucleus	19.72	12.64
OQU86111	Sorghum	plastid	22.15	10.21
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	13.15	10.0

Protein Annotations

MapMan:15.5.19	EntrezGene:8072107	UniProt:C5XKV1	EnsemblPlants:EES03657	ProteinID:EES03657	ProteinID:EES03657.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF67	EnsemblPlantsGene:SORBI_3003G305000	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A84DE2
RefSeq:XP_002458537.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:63503953..63506891

Molecular Weight (calculated)

31153.5 Da

IEP (calculated)

7.388

GRAVY (calculated)

-0.465

Length

289 amino acids

Sequence
(BLAST)

001: MIRGGNNQEA ADVEELLAHH QQNKQHAAVA TSSRQWSAQT ESRIVRVSRV FGGKDRHSKV KTVKGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL
101: LNAARHEIDK LPPLQFPPHQ DLMVGHLTPH MPLVHEETKF GHIAAAAALA SDGGGAKVSQ QGDVDVDVDG TGGAHHLVGR FPGGGYYHRF MELNSALGMV
201: SSAMAPYSNY TGEAWNNSSG GMHDGGAGGS PQVVAAAHHS PFPSLLSLAP RPHQLAFYSS EGDQQFQVEN LGSQSLSLSS ARAYHDQAS

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.