CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19490
OQU75979

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	OQU75979	AT4G14700.1	18818695
AT1G30210.1	EES19490	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89064	Sorghum	cytosol	15.62	90.0
Zm00001d018806_P001	Maize	nucleus	84.6	89.24
Os03t0785800-01	Rice	nucleus	39.91	51.54
KXG37409	Sorghum	cytosol	42.08	49.87
GSMUA_Achr7P01160_001	Banana	nucleus	40.35	48.69
GSMUA_Achr4P22960_001	Banana	nucleus	39.48	47.64
GSMUA_Achr2P12990_001	Banana	nucleus	38.61	47.09
GSMUA_Achr5P02530_001	Banana	nucleus	38.83	46.86
GSMUA_Achr4P31520_001	Banana	nucleus	38.61	46.84
AT1G30210.1	Thale cress	nucleus	30.59	43.52
VIT_10s0003g03910.t01	Wine grape	nucleus	41.65	43.24
PGSC0003DMT400051253	Potato	nucleus	31.02	41.81
AT4G18390.1	Thale cress	nucleus	32.1	40.55
EES16387	Sorghum	cytosol, nucleus, plastid	25.6	39.07
Solyc08g048390.1.1	Tomato	nucleus	32.32	38.5
KRH58674	Soybean	nucleus	38.83	37.45
KRH42567	Soybean	nucleus	37.31	36.75
Solyc08g048370.2.1	Tomato	cytosol	25.81	36.5
KRH11155	Soybean	nucleus	40.35	36.4
KRH21093	Soybean	nucleus	40.56	35.15
CDX78849	Canola	nucleus, plastid	17.35	33.47
Bra013304.1-P	Field mustard	nucleus, plastid	17.35	33.47
EES18493	Sorghum	cytosol	18.0	27.85
EES03657	Sorghum	nucleus	15.62	24.91
EER96723	Sorghum	nucleus	10.41	17.91
EES13882	Sorghum	cytosol	9.98	17.9
KXG33398	Sorghum	nucleus	15.84	16.19
OQU86111	Sorghum	plastid	21.26	15.63
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	12.8	15.53

Protein Annotations

MapMan:15.5.19	EntrezGene:8086415	UniProt:C5X9K3	InterPro:CYC/TB1_R_domain	EnsemblPlants:EER95875	ProteinID:EER95875
ProteinID:EER95875.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888
PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF2	EnsemblPlantsGene:SORBI_3002G035500
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A82F88	RefSeq:XP_002459354.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:3332982..3339754

Molecular Weight (calculated)

47883.7 Da

IEP (calculated)

9.974

GRAVY (calculated)

-0.430

Length

461 amino acids

Sequence
(BLAST)

001: MEVEAVGCAG AAVAGGGGAG GKRGRAKAGA GAEPEPKRRA VAVAVPPAAG APWAQQHPAS RIYRVSRASG GKDRHSKVYT AKGIRDRRVR LSVATAIQFY
101: DLQDRLGYDQ PSKAIEWLIR AAADAIDKLP SLDAAAGFPA HPASAAKDHH AHHGPPPAGD DGDEHHHHQQ LTRSGCSSTS ETSKGSVLSL SRSESRVKAR
201: ERARERSAVA RDKDKDKDPA AAANDGTARR VVATTTSAQA ASFTELLTGM AAASAAAPAD HKHHQQSSVS WGQTTTVSAA TADYIGFAQP RKGAGHAMAH
301: AFAAPAPHLG NIASIAMAPA AQHFGLASGA VTVASGGGEP NAEMTHFSFL QDHFMPVHAA PAPAPTPAIE YNLNFSMSSG LVGVNSRGTL QSNSQPHISG
401: HHHHQQQLQR LSTPLDAPNI PFLFSPPAAA AAAPTTAEGQ FAAFQLWNGF QHADMKEKGK N

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.