Factsheet for VIT_10s0003g03910.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g00530.t01
VIT_06s0004g02050.t01
VIT_07s0104g00020.t01
VIT_13s0175g00030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	VIT_06s0004g00530.t01	AT4G14700.1	18818695
AT1G30210.1	VIT_06s0004g02050.t01	AT4G14700.1	18818695
AT1G30210.1	VIT_13s0175g00030.t01	AT4G14700.1	18818695
AT1G30210.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11155	Soybean	nucleus	66.67	57.93
PGSC0003DMT400051253	Potato	nucleus	43.47	56.43
KRH21093	Soybean	nucleus	66.89	55.83
KRH58674	Soybean	nucleus	58.78	54.6
Solyc08g048390.1.1	Tomato	nucleus	47.3	54.26
CDX99891	Canola	nucleus	38.74	54.26
GSMUA_Achr2P12990_001	Banana	nucleus	45.95	53.97
KRH42567	Soybean	nucleus	56.76	53.85
Bra032365.1-P	Field mustard	nucleus	38.29	53.46
CDY26285	Canola	nucleus	38.29	53.46
GSMUA_Achr7P01160_001	Banana	nucleus	45.72	53.14
AT1G30210.1	Thale cress	nucleus	38.51	52.78
OQU89064	Sorghum	cytosol	9.46	52.5
GSMUA_Achr4P22960_001	Banana	nucleus	44.14	51.31
CDY59229	Canola	nucleus	35.81	50.8
Bra010789.1-P	Field mustard	nucleus	35.14	50.65
CDX90234	Canola	nucleus	35.14	50.65
GSMUA_Achr4P31520_001	Banana	nucleus	43.02	50.26
Solyc08g048370.2.1	Tomato	cytosol	36.49	49.69
GSMUA_Achr5P02530_001	Banana	nucleus	42.57	49.48
HORVU2Hr1G060120.1	Barley	nucleus	44.37	47.82
TraesCS2D01G252100.1	Wheat	nucleus	43.69	46.63
TraesCS2B01G265800.1	Wheat	nucleus	43.47	45.52
Os07t0152000-01	Rice	nucleus	43.92	43.82
Zm00001d018806_P001	Maize	nucleus	42.12	42.79
Os03t0785800-01	Rice	nucleus	34.23	42.58
KXG37409	Sorghum	cytosol	36.71	41.9
Zm00001d007868_P001	Maize	nucleus	41.44	41.82
EER95875	Sorghum	cytosol, nucleus, peroxisome	43.24	41.65
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	35.14	40.94
Zm00001d034353_P001	Maize	cytosol	34.68	39.9
HORVU5Hr1G103400.1	Barley	nucleus	35.81	39.75
EES16387	Sorghum	cytosol, nucleus, plastid	26.35	38.74
TraesCS5B01G426200.1	Wheat	nucleus	34.91	38.37
TraesCS5D01G040100.1	Wheat	nucleus	25.45	38.31
TraesCS5A01G423900.1	Wheat	cytosol	34.91	38.27
TraesCS5D01G432500.1	Wheat	nucleus	34.46	38.15
HORVU5Hr1G008340.2	Barley	nucleus	25.23	37.97
TraesCS5A01G031900.1	Wheat	nucleus	25.23	37.71
TraesCS5B01G032000.1	Wheat	nucleus	25.45	37.67
Zm00001d022256_P001	Maize	nucleus	26.35	36.22
TraesCS2A01G251100.1	Wheat	plastid, vacuole	43.02	34.85
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	13.06	27.88
VIT_14s0068g00330.t01	Wine grape	nucleus	19.59	24.93
VIT_12s0028g02520.t01	Wine grape	nucleus	16.89	24.43
VIT_19s0014g01680.t01	Wine grape	nucleus	21.85	24.37
VIT_14s0083g00150.t01	Wine grape	nucleus	14.86	20.0
VIT_10s0003g00870.t01	Wine grape	nucleus	15.77	18.32
VIT_17s0000g04180.t01	Wine grape	nucleus	13.74	16.67
VIT_01s0011g02920.t01	Wine grape	nucleus	14.19	14.38

Protein Annotations

EntrezGene:100249845	wikigene:100249845	MapMan:15.5.19	EMBL:AM435047	ProteinID:CAN73776	ProteinID:CAN73776.1
ProteinID:CCB55811	ProteinID:CCB55811.1	InterPro:CYC/TB1_R_domain	ncoils:Coil	UniProt:F6HLT7	EMBL:FN595992
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	EntrezGene:LOC100249845
wikigene:LOC100249845	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF2
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00019842CC	ArrayExpress:VIT_10s0003g03910	EnsemblPlantsGene:VIT_10s0003g03910	EnsemblPlants:VIT_10s0003g03910.t01
RefSeq:XP_002271548	RefSeq:XP_002271548.1	RefSeq:XP_010655682.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:6666005..6668779

Molecular Weight (calculated)

48538.0 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.873

Length

444 amino acids

Sequence
(BLAST)

001: MEVDEIQTQA CKFSRVGNGR NDLTKIGQKG GDQYPDDEED GEIKRGGGGG SDGGRLRAWH HSRIFRVSRA SGGKDRHSKV LTSKGLRDRR VRLSVTTAIQ
101: FYDLQDRLGY DQPSKAVEWL IKAASDAIAE LPSLNSSFPD TPKQLSDEKR PSPGTEQGFD SVDLEGEHNY QHQHPQQHIS LSKSACSSTS ETSKGSGLSL
201: SRSEIRVNRV KARERARERA AKEKEKEKEN ESRAAHPHNV NNPIPQSSSF TELLTGGIGC ASNNATSVQH NPSGEPNLFH KMTRQWTSTM DYIGPGFLGS
301: SSSRTNHSSG FAGQIHLGNS LPQSPFNVAG DHHPELQHFS FVPDHLIPVA TSQPGGSDNN LNFTISSGLA GFNRGTLQSN SPSLLPHLQR FSPIDGSNLP
401: FFMGAAPVEN HHHHHQFPPG FDGCLQLYYG DGSRHSDQKG KGKN

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.