Factsheet for Zm00001d013119_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010341_P002
Zm00001d037086_P006
Zm00001d038134_P001
Zm00001d045080_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	Zm00001d037086_P006	AT4G14700.1	18818695
AT1G30210.1	Zm00001d045080_P001	AT4G14700.1	18818695
AT1G30210.1	Zm00001d010341_P002	AT5G13060.1	18818695
AT1G30210.1	Zm00001d038134_P001	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37409	Sorghum	cytosol	89.5	87.66
Zm00001d034353_P001	Maize	cytosol	87.93	86.79
TraesCS2B01G265800.1	Wheat	nucleus	51.44	46.23
TraesCS2D01G252100.1	Wheat	nucleus	50.13	45.91
HORVU2Hr1G060120.1	Barley	nucleus	49.34	45.63
Zm00001d018806_P001	Maize	nucleus	51.18	44.62
Zm00001d007868_P001	Maize	nucleus	50.13	43.41
GSMUA_Achr4P22960_001	Banana	nucleus	41.73	41.62
GSMUA_Achr2P12990_001	Banana	nucleus	40.94	41.27
GSMUA_Achr4P31520_001	Banana	nucleus	40.94	41.05
GSMUA_Achr7P01160_001	Banana	nucleus	40.68	40.58
GSMUA_Achr5P02530_001	Banana	nucleus	40.16	40.05
AT1G30210.1	Thale cress	nucleus	33.6	39.51
Zm00001d022256_P001	Maize	nucleus	30.71	36.22
VIT_10s0003g03910.t01	Wine grape	nucleus	40.94	35.14
PGSC0003DMT400051253	Potato	nucleus	31.23	34.8
AT4G18390.1	Thale cress	nucleus	33.07	34.52
TraesCS2A01G251100.1	Wheat	plastid, vacuole	49.61	34.49
KRH58674	Soybean	nucleus	41.21	32.85
KRH42567	Soybean	nucleus	39.37	32.05
Solyc08g048390.1.1	Tomato	nucleus	31.76	31.27
KRH11155	Soybean	nucleus	40.68	30.33
Solyc08g048370.2.1	Tomato	cytosol	25.2	29.45
KRH21093	Soybean	nucleus	40.16	28.76
CDX78849	Canola	nucleus, plastid	17.85	28.45
Bra013304.1-P	Field mustard	nucleus, plastid	17.85	28.45
Zm00001d010730_P001	Maize	cytosol, plastid	20.21	28.0
Zm00001d038683_P001	Maize	cytosol	20.47	26.17
Zm00001d043368_P001	Maize	cytosol	18.64	25.09
Zm00001d008919_P001	Maize	nucleus, plastid	22.83	20.47
Zm00001d032217_P001	Maize	cytosol	12.34	19.58
Zm00001d043423_P001	Maize	nucleus	21.78	19.12
Zm00001d020433_P001	Maize	nucleus	12.6	18.97
Zm00001d005737_P001	Maize	cytosol	13.39	18.48
Zm00001d050389_P001	Maize	nucleus	13.12	18.25
Zm00001d039371_P001	Maize	mitochondrion	24.15	16.28
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.39	13.93
Zm00001d013467_P001	Maize	nucleus	12.6	13.37
Zm00001d012725_P002	Maize	plastid	22.05	12.03

Protein Annotations

EntrezGene:103625824	MapMan:15.5.19	UniProt:A0A1D6GG32	ProteinID:AQK62511.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF63
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000221BE86	EnsemblPlantsGene:Zm00001d013119	EnsemblPlants:Zm00001d013119_P001	EnsemblPlants:Zm00001d013119_T001
SEG:seg	:	:	:	:	:

Description

TCP-transcription factor 44Transcription factor TCP2

Coordinates

chr5:-:5078404..5079549

Molecular Weight (calculated)

39055.3 Da

IEP (calculated)

10.163

GRAVY (calculated)

-0.412

Length

381 amino acids

Sequence
(BLAST)

001: MEAAAVGAGA PGRSQQQGSK RGRGGAVRGS EAEAAWGQPP PPPPPLGPGA GSRIYRVRAS GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD
101: QPSKAIEWLI NAAAAAIDKL PELDPAAFAA LPAPGDADAA GKDKQQQGSK SAGSSTSETS KGSELSLSRS DSRGGASARD REVTVASTSA QAASFTELLT
201: GVASAGAISA AEHRQSWHHQ PNVSAAAAGC VGIAHNGKGA HGLSTHAFSG PAAAKFGSAP PFGLVPAQPF NFTSPIEMPH FSLGQDTLAA SSAAAGDYSL
301: GFSMSSGFLG ASRGTLQSNS QSNFSGHHHH QLQRLDGPLL FGHVHGAAVA HPASENQLTS SAALQLWDGL RHSGMKEKSK N

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.