Factsheet for Zm00001d039371_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002049_P001
Zm00001d006338_P002
Zm00001d007465_P001
Zm00001d013346_P001
Zm00001d013555_P001
Zm00001d033396_P003
Zm00001d033876_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	Zm00001d002049_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d006338_P002	AT2G22840.1	21245844
AT2G31070.1	Zm00001d007465_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d013346_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d013555_P001	AT2G22840.1	21245844
AT2G31070.1	Zm00001d033396_P003	AT2G22840.1	21245844
AT2G31070.1	Zm00001d033876_P004	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008919_P001	Maize	nucleus, plastid	61.95	82.35
OQU86111	Sorghum	plastid	87.26	78.63
TraesCS3B01G164500.1	Wheat	nucleus	62.3	78.22
TraesCS3D01G146900.1	Wheat	nucleus	61.95	77.09
TraesCS3A01G140100.1	Wheat	nucleus	61.95	76.59
Os01t0213800-01	Rice	mitochondrion	77.17	75.3
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	76.46	73.22
GSMUA_Achr10P...	Banana	nucleus	23.19	52.61
GSMUA_Achr10P...	Banana	nucleus	24.6	52.45
VIT_19s0014g01680.t01	Wine grape	nucleus	35.04	49.75
GSMUA_Achr6P14430_001	Banana	nucleus	20.53	48.33
KRH27317	Soybean	nucleus	31.5	47.21
PGSC0003DMT400032269	Potato	nucleus	33.1	46.75
Solyc07g062680.1.1	Tomato	nucleus	33.1	46.75
KRH26201	Soybean	nucleus	32.74	46.6
KRH55125	Soybean	nucleus	32.21	46.55
GSMUA_Achr3P03540_001	Banana	nucleus	32.04	45.02
KRH22307	Soybean	nucleus	27.26	44.77
KRH27017	Soybean	nucleus	27.08	44.61
KRH21998	Soybean	nucleus	30.44	43.77
Bra021586.1-P	Field mustard	nucleus	26.73	43.14
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	35.93	43.1
AT1G53230.1	Thale cress	nucleus	29.73	42.97
KRH25697	Soybean	nucleus	22.12	42.96
AT3G15030.1	Thale cress	nucleus	31.68	42.62
Solyc12g014140.1.1	Tomato	nucleus	29.56	42.39
PGSC0003DMT400039786	Potato	nucleus	31.5	42.28
Bra030952.1-P	Field mustard	nucleus	25.66	42.03
Bra027284.1-P	Field mustard	nucleus	29.91	41.63
VIT_12s0028g02520.t01	Wine grape	nucleus	22.3	41.04
Bra001579.1-P	Field mustard	nucleus	29.2	40.54
Solyc07g053410.2.1	Tomato	cytosol	17.35	40.16
Solyc05g012840.1.1	Tomato	nucleus	15.4	39.01
KRH55819	Soybean	nucleus	22.83	38.74
Bra018280.1-P	Field mustard	nucleus	23.36	37.82
AT2G31070.1	Thale cress	nucleus	24.07	37.67
Solyc10g018710.1.1	Tomato	nucleus	11.33	37.43
PGSC0003DMT400024329	Potato	nucleus	20.18	36.66
Zm00001d043423_P001	Maize	nucleus	25.31	32.95
Solyc11g045640.1.1	Tomato	nucleus	12.57	32.42
Solyc05g032780.1.1	Tomato	nucleus	11.86	31.6
PGSC0003DMT400059117	Potato	nucleus	18.23	30.84
VIT_10s0003g00870.t01	Wine grape	nucleus	19.82	29.32
Solyc02g077250.2.1	Tomato	nucleus	17.88	28.53
Zm00001d022256_P001	Maize	nucleus	14.16	24.77
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	16.28	24.15
Zm00001d010730_P001	Maize	cytosol, plastid	11.68	24.0
Zm00001d034353_P001	Maize	cytosol	16.11	23.58
Zm00001d038683_P001	Maize	cytosol	11.86	22.48
Zm00001d043368_P001	Maize	cytosol	11.15	22.26
Zm00001d018806_P001	Maize	nucleus	16.99	21.97
Zm00001d007868_P001	Maize	nucleus	16.81	21.59
Zm00001d012725_P002	Maize	plastid	26.37	21.35
Zm00001d020433_P001	Maize	nucleus	8.5	18.97
Zm00001d032217_P001	Maize	cytosol	7.96	18.75
PGSC0003DMT400068478	Potato	nucleus	16.99	18.43
Zm00001d005737_P001	Maize	cytosol	8.85	18.12
Solyc10g008780.1.1	Tomato	nucleus	17.52	17.01
Zm00001d050389_P001	Maize	nucleus	7.96	16.42
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	9.73	15.03
Zm00001d013467_P001	Maize	nucleus	9.03	14.21

Protein Annotations

EntrezGene:100281134	MapMan:15.5.19	UniProt:A0A1D6MFZ2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	ProteinID:ONM28485.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF66
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002213CC2	EnsemblPlantsGene:Zm00001d039371	EnsemblPlants:Zm00001d039371_P001	EnsemblPlants:Zm00001d039371_T001
SEG:seg	:	:	:	:	:

Description

TCP-transcription factor 33Transcription factor TCP4

Coordinates

chr3:+:2709285..2712754

Molecular Weight (calculated)

58831.7 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.590

Length

565 amino acids

Sequence
(BLAST)

001: MYQCVGLVCY GRRRVGWTRL VGRGAAVAAG NQAGDLDPRH HHRAPHGGDA GGGGEGGGGG GAQQEADEQQ RHHNNRLLQF HQQVQQNQDP PPVPLFQLQH
101: LQAAAAVRQR GGLSAEYALL DPMGDAGQSH SHRHHHGFQP QLLSFGGVGQ HHMHQFTAQA PAASHSSRPR IGGVGAGGEA AAATSASHSR ARGGAGEIVA
201: VQGGHIVRST GRKDRHSKVC TARGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI KNAKDAIDKL ETLPAWQPTA NAAAPPSSST HPDSAENSDD
301: QAQAITVAAH APFDFSGAGG ASGGAAGFLP ASLDSDSIAD TIKSFFPMAG TGGGGEASSS TAAAQSSAMG FQSYTPDLLS RTGSHSQELR LSLQSLPDPM
401: FHQQQDRSEA HGGNGSAQQA LFSGAASYSF GGGAMWGEQA QSQRMVPWTV PDPGGGSAGG YLFNVSQQAA HMQAAFGGQS QFFFQRGPLQ SSNQPSERGW
501: PESVEADNPM QHGGLSPAVS AIGFSPGVGF SGIRIPTRMQ GDEEHNGGGN GDKPPPPSVS SASHH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.