Factsheet for Bra021586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20097	Canola	nucleus	98.0	96.08
Bra027284.1-P	Field mustard	nucleus	83.43	71.92
Bra001579.1-P	Field mustard	nucleus	82.29	70.76
AT3G15030.1	Thale cress	nucleus	82.57	68.81
Bra030952.1-P	Field mustard	nucleus	52.29	53.04
Solyc12g014140.1.1	Tomato	nucleus	45.71	40.61
VIT_12s0028g02520.t01	Wine grape	nucleus	33.43	38.11
PGSC0003DMT400039786	Potato	nucleus	45.71	38.0
TraesCS3B01G164500.1	Wheat	nucleus	44.86	34.89
TraesCS3D01G146900.1	Wheat	nucleus	44.86	34.58
TraesCS3A01G140100.1	Wheat	nucleus	44.57	34.14
Zm00001d008919_P001	Maize	nucleus, plastid	40.86	33.65
Bra018280.1-P	Field mustard	nucleus	33.43	33.52
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	45.14	26.78
Zm00001d039371_P001	Maize	mitochondrion	43.14	26.73
KXG33398	Sorghum	nucleus	34.29	26.61
Os01t0213800-01	Rice	mitochondrion	43.71	26.42
Os01t0755500-01	Rice	cytosol, mitochondrion	32.57	25.56
Zm00001d043423_P001	Maize	nucleus	31.14	25.12
OQU86111	Sorghum	plastid	42.57	23.76
Bra005967.1-P	Field mustard	nucleus, plastid	16.57	23.58
Bra010789.1-P	Field mustard	nucleus	20.57	23.38
Bra032365.1-P	Field mustard	nucleus	19.14	21.07
Bra012600.1-P	Field mustard	nucleus	21.43	19.63
Bra029344.1-P	Field mustard	nucleus, plastid	16.29	18.94
Bra039158.1-P	Field mustard	nucleus	16.57	18.77
Bra012990.1-P	Field mustard	nucleus	17.71	16.94
HORVU0Hr1G006890.2	Barley	cytosol	10.0	16.28
Bra034010.1-P	Field mustard	nucleus	16.0	16.18
Bra004212.1-P	Field mustard	nucleus	15.71	16.13
Zm00001d012725_P002	Maize	plastid	32.0	16.05
Bra004097.1-P	Field mustard	nucleus	14.86	14.99
Bra038350.1-P	Field mustard	nucleus	13.14	13.73
Bra037579.1-P	Field mustard	nucleus	9.71	11.93
Bra001032.1-P	Field mustard	nucleus	18.0	11.71
Bra013304.1-P	Field mustard	nucleus, plastid	6.86	10.04
Bra001710.1-P	Field mustard	nucleus	11.14	9.18

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra021586	EnsemblPlants:Bra021586.1	EnsemblPlants:Bra021586.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4DYJ0	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002544186	SEG:seg	:

Description

AT1G53230 (E=1e-082) TCP3 | TCP3; transcription factor

Coordinates

chrA01:-:24329962..24331014

Molecular Weight (calculated)

38205.2 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.719

Length

350 amino acids

Sequence
(BLAST)

001: MADDHDEAHH FLHPQPPPPS SMRHRAASDE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIRKAQTSI
101: DELAQLPPWS PADAIRNAKP RRTAAKTKIS PSPPPPQREQ LQFGGARSGG FDGAAELPSF LPPSTDSESF FPVVGSSTEA PPSQDLRLSL HSFPDGPPSL
201: LHRHHSAPEP VLFYGQSNPF GYDGWEQQSI QRLVACNGGG ATDTGNGGGG FLFAPSPTTS YQPVLGQSQL CSQRGSLQSS YTPMIRAWFD PHHHQSISTE
301: DLSHHIPPPV FASGEFSSGF RVPARFQGQE EEQQDGLTNK PSSASSVSRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.