Factsheet for Bra001032.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74272	Canola	nucleus	52.79	88.75
CDX91977	Canola	nucleus	52.6	88.44
Bra039158.1-P	Field mustard	nucleus	41.64	72.49
AT3G02150.2	Thale cress	nucleus	43.31	65.63
Solyc02g065800.1.1	Tomato	cytosol, plastid	13.38	50.7
VIT_14s0068g00330.t01	Wine grape	nucleus	23.79	36.68
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	14.13	34.86
KRG93654	Soybean	nucleus	24.16	34.76
KRH45058	Soybean	nucleus	21.93	33.24
KRH01308	Soybean	cytosol	22.68	31.77
Zm00001d010730_P001	Maize	cytosol, plastid	15.99	31.27
Zm00001d038683_P001	Maize	cytosol	16.73	30.2
TraesCS3D01G298900.1	Wheat	nucleus	15.43	30.18
Bra005967.1-P	Field mustard	nucleus, plastid	13.75	30.08
Os05t0513100-01	Rice	nucleus	16.36	29.93
EES18493	Sorghum	cytosol	16.54	29.87
TraesCS3A01G302900.1	Wheat	nucleus	15.24	29.5
TraesCS3B01G333400.1	Wheat	nucleus	15.24	29.29
HORVU3Hr1G073830.1	Barley	nucleus	15.06	29.14
EES03657	Sorghum	nucleus	15.61	29.07
Zm00001d043368_P001	Maize	cytosol	15.24	28.98
HORVU1Hr1G077080.1	Barley	nucleus	15.06	27.74
TraesCS1A01G332600.1	Wheat	nucleus	15.61	27.45
Os01t0763200-01	Rice	cytosol	15.43	27.04
TraesCS1B01G346300.1	Wheat	nucleus	15.43	26.95
TraesCS1D01G335300.1	Wheat	nucleus	15.61	26.84
Bra029344.1-P	Field mustard	nucleus, plastid	14.68	26.25
Bra012990.1-P	Field mustard	nucleus	17.66	25.96
Bra010789.1-P	Field mustard	nucleus	12.45	21.75
Bra032365.1-P	Field mustard	nucleus	12.45	21.07
Bra018280.1-P	Field mustard	nucleus	12.08	18.62
Bra012600.1-P	Field mustard	nucleus	13.01	18.32
Bra030952.1-P	Field mustard	nucleus	11.71	18.26
Bra021586.1-P	Field mustard	nucleus	11.71	18.0
Bra027284.1-P	Field mustard	nucleus	12.45	16.5
Bra001579.1-P	Field mustard	nucleus	12.27	16.22
Bra037579.1-P	Field mustard	nucleus	7.81	14.74
Bra004212.1-P	Field mustard	nucleus	9.11	14.37
Bra034010.1-P	Field mustard	nucleus	8.74	13.58
Bra004097.1-P	Field mustard	nucleus	8.55	13.26
Bra038350.1-P	Field mustard	nucleus	7.43	11.94
Bra001710.1-P	Field mustard	nucleus	8.36	10.59
Bra013304.1-P	Field mustard	nucleus, plastid	3.16	7.11

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra001032	EnsemblPlants:Bra001032.1	EnsemblPlants:Bra001032.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4CA03	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000254085E	SEG:seg	:

Description

AT3G02150 (E=2e-096) PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor

Coordinates

chrA03:+:14456673..14459645

Molecular Weight (calculated)

59436.8 Da

IEP (calculated)

8.487

GRAVY (calculated)

-0.354

Length

538 amino acids

Sequence
(BLAST)

001: MDTGPWKDTN DDVSGQTRTR REGESEEAVA TTKRPATISS SSSWMKSKDP RIVRVSRAFG GKDRHSKVCT LRGLRDRRVR LSVPTAIQLY DLQERLGLDQ
101: PSKAVDWLLN VAKEEIDELP PLPVSPETFT LFNHHQSFLN LGQRPGQDPT QLGFKINGCV EESTTTSREE NNNERGEKDV SFANNHHIGS YGTYHNMEHH
201: HQQHSSFQAD YHQHQLHSLV PFPSQFLVCP MTTLSTTTTT TQSLFPSSSS AGSWTMETTD PRRMIFPGSD RSGGRDAFWR LNEAVQDGGV NEVGFSGVAP
301: SDLVFSFVDL HGVAAVVARE TQFWYSPLVF SLVALAKSFI FELEWSVLFF LSSGYLASCI KTWSNCVRWR RRTSLSARAQ RIGGRVAVTS LHGFSSGGLS
401: PFARSLSSSV HSPSSSWEVS GVFISALVLA LGSPPMCWPE LREYRIRFSD PDRKLRVASY ESVGVTRSLE TRLKIDHPSA GISTWSLDVL VASAIDGKHS
501: SPDSPVFCAS LTVSVAMMLK SSGSSYSGRK TTRTAAVS

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.