Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03657 | Sorghum | nucleus | 89.05 | 87.2 |
| TraesCS3D01G298900.1 | Wheat | nucleus | 67.14 | 69.09 |
| TraesCS3A01G302900.1 | Wheat | nucleus | 67.49 | 68.7 |
| Os01t0763200-01 | Rice | cytosol | 73.85 | 68.08 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 66.78 | 67.5 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 65.72 | 66.91 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 48.76 | 50.18 |
| Zm00001d038683_P001 | Maize | cytosol | 51.59 | 48.99 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 24.38 | 48.59 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 27.21 | 35.32 |
| PGSC0003DMT400003453 | Potato | nucleus, plastid | 31.1 | 31.1 |
| Solyc02g089020.1.1 | Tomato | nucleus, plastid | 30.39 | 30.28 |
| VIT_14s0068g00330.t01 | Wine grape | nucleus | 35.69 | 28.94 |
| KRH45058 | Soybean | nucleus | 34.63 | 27.61 |
| KRG93654 | Soybean | nucleus | 35.69 | 27.01 |
| KRH01308 | Soybean | cytosol | 35.34 | 26.04 |
| CDX91977 | Canola | nucleus | 29.33 | 25.94 |
| CDX74272 | Canola | nucleus | 29.33 | 25.94 |
| Bra039158.1-P | Field mustard | nucleus | 27.92 | 25.57 |
| AT3G02150.2 | Thale cress | nucleus | 28.27 | 22.54 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 28.27 | 20.15 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 28.27 | 18.65 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 25.09 | 18.64 |
| Zm00001d032217_P001 | Maize | cytosol | 15.55 | 18.33 |
| Zm00001d034353_P001 | Maize | cytosol | 24.73 | 18.13 |
| Zm00001d022256_P001 | Maize | nucleus | 19.79 | 17.34 |
| Zm00001d050389_P001 | Maize | nucleus | 15.9 | 16.42 |
| Zm00001d018806_P001 | Maize | nucleus | 25.09 | 16.25 |
| Zm00001d007868_P001 | Maize | nucleus | 24.73 | 15.91 |
| Zm00001d020433_P001 | Maize | nucleus | 13.78 | 15.41 |
| Bra001032.1-P | Field mustard | nucleus | 28.98 | 15.24 |
| Zm00001d005737_P001 | Maize | cytosol | 14.13 | 14.49 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 20.14 | 13.41 |
| Zm00001d043423_P001 | Maize | nucleus | 19.79 | 12.9 |
| Zm00001d039371_P001 | Maize | mitochondrion | 22.26 | 11.15 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 12.72 | 9.84 |
| Zm00001d013467_P001 | Maize | nucleus | 11.31 | 8.91 |
| Zm00001d012725_P002 | Maize | plastid | 19.08 | 7.74 |
Protein Annotations
| EntrezGene:100284941 | MapMan:15.5.19 | UniProt:B6TZ02 | EMBL:EU970217 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | EMBL:KJ728008 | ProteinID:ONM37700.1 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF67 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000182FBDB | EnsemblPlantsGene:Zm00001d043368 |
| EnsemblPlants:Zm00001d043368_P001 | EnsemblPlants:Zm00001d043368_T001 | SEG:seg | : | : | : |
Description
TCP-transcription factor 30TCP family transcription factor containing protein
Coordinates
chr3:+:197856616..197857467
Molecular Weight (calculated)
30476.9 Da
IEP (calculated)
9.343
GRAVY (calculated)
-0.423
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRGGNHQQA ADVEEELARN SRHAAAVATS RQWSAQTESR IVRVSRVFGG KDRHSKVKTV KGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA
101: ARHEIDKLPP LQFPPQDLMV GHLTPHNMPL MVHDEKFGHL AAAAALASGG GGGAKVSQQG NVVDVDGTGA HHLVGRFPGG YHRFMELNSA LGMVSGAMAP
201: PYNNNYTGEA WNNSGGGVHD SGSPQIVAAA AHHSPFPSLL SLAPRPHQLA FYSSEADQQF QVENLGSQSL SLSSARAYHD QAS
101: ARHEIDKLPP LQFPPQDLMV GHLTPHNMPL MVHDEKFGHL AAAAALASGG GGGAKVSQQG NVVDVDGTGA HHLVGRFPGG YHRFMELNSA LGMVSGAMAP
201: PYNNNYTGEA WNNSGGGVHD SGSPQIVAAA AHHSPFPSLL SLAPRPHQLA FYSSEADQQF QVENLGSQSL SLSSARAYHD QAS
001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
Arabidopsis Description
TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.