Factsheet for PGSC0003DMT400003453

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089020.1.1	Tomato	nucleus, plastid	87.99	87.68
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	33.57	43.58
VIT_14s0068g00330.t01	Wine grape	nucleus	53.36	43.27
KRH45058	Soybean	nucleus	47.7	38.03
Zm00001d010730_P001	Maize	cytosol, plastid	34.28	35.27
EES18493	Sorghum	cytosol	35.34	33.56
Zm00001d038683_P001	Maize	cytosol	35.34	33.56
KRG93654	Soybean	nucleus	44.17	33.42
KRH01308	Soybean	cytosol	45.23	33.33
Os05t0513100-01	Rice	nucleus	34.28	32.99
TraesCS3D01G298900.1	Wheat	nucleus	31.8	32.73
HORVU3Hr1G073830.1	Barley	nucleus	31.8	32.37
TraesCS3A01G302900.1	Wheat	nucleus	31.8	32.37
PGSC0003DMT400063327	Potato	nucleus, plastid	39.22	32.27
TraesCS3B01G333400.1	Wheat	nucleus	31.8	32.14
PGSC0003DMT400010453	Potato	nucleus, plastid	34.28	31.8
HORVU1Hr1G077080.1	Barley	nucleus	32.16	31.16
EES03657	Sorghum	nucleus	31.8	31.14
Zm00001d043368_P001	Maize	cytosol	31.1	31.1
TraesCS1A01G332600.1	Wheat	nucleus	33.57	31.05
TraesCS1B01G346300.1	Wheat	nucleus	33.22	30.52
TraesCS1D01G335300.1	Wheat	nucleus	33.22	30.03
Os01t0763200-01	Rice	cytosol	32.51	29.97
PGSC0003DMT400051253	Potato	nucleus	25.09	20.76
PGSC0003DMT400008673	Potato	nucleus	10.25	18.47
PGSC0003DMT400024329	Potato	nucleus	19.79	18.01
PGSC0003DMT400059117	Potato	nucleus	18.02	15.27
PGSC0003DMT400032269	Potato	nucleus	21.55	15.25
PGSC0003DMT400039786	Potato	nucleus	21.91	14.73
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	12.37	14.71
PGSC0003DMT400010380	Potato	nucleus	14.13	14.34
PGSC0003DMT400002153	Potato	nucleus	15.19	12.15
PGSC0003DMT400019324	Potato	nucleus	15.55	11.55
PGSC0003DMT400014572	Potato	nucleus	14.49	10.85
PGSC0003DMT400068478	Potato	nucleus	18.37	9.98

Protein Annotations

EntrezGene:102580219	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M0ZLP7	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400001362	PGSC:PGSC0003DMG400001362	EnsemblPlants:PGSC0003DMT400003453	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000296136E	RefSeq:XP_006338357.1
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400001362]

Coordinates

chr2:-:45517252..45519036

Molecular Weight (calculated)

31701.9 Da

IEP (calculated)

7.050

GRAVY (calculated)

-0.755

Length

283 amino acids

Sequence
(BLAST)

001: MITREEKANE SKASSSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKH EIDELPPLQI
101: PPGSLNPNLY PMLGIGGNSH QITSNKEGLN NKSINWDDNV VPLEPPNNNN NNALGYNSNF LKWDPSNLSL AHSENSLSHQ HQDIHHNFNL MSSMPLGSHH
201: QVVVYPPGLP QFFHQHNIVG PSSSSEFDPK EINFQMLSNN SGSENPMSSS TNSFRHSIDS TSQSIRPFHF LPSQNCDETE PSN

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.