Factsheet for PGSC0003DMT400068478

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008780.1.1	Tomato	nucleus	89.06	79.73
PGSC0003DMT400059117	Potato	nucleus	30.52	47.6
GSMUA_Achr8P19990_001	Banana	nucleus	15.36	33.2
PGSC0003DMT400024329	Potato	nucleus	16.31	27.33
PGSC0003DMT400032269	Potato	nucleus	18.62	24.25
PGSC0003DMT400039786	Potato	nucleus	19.19	23.75
TraesCS3B01G164500.1	Wheat	nucleus	19.77	22.89
TraesCS3D01G146900.1	Wheat	nucleus	19.58	22.47
TraesCS3A01G140100.1	Wheat	nucleus	19.58	22.32
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	9.21	22.02
PGSC0003DMT400008673	Potato	nucleus	6.53	21.66
Os01t0755500-01	Rice	cytosol, mitochondrion	18.23	21.3
Zm00001d043423_P001	Maize	nucleus	17.66	21.2
KXG33398	Sorghum	nucleus	18.23	21.06
Zm00001d008919_P001	Maize	nucleus, plastid	16.31	20.0
PGSC0003DMT400003453	Potato	nucleus, plastid	9.98	18.37
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	19.77	17.46
Os01t0213800-01	Rice	mitochondrion	19.19	17.27
PGSC0003DMT400051253	Potato	nucleus	11.32	17.25
Zm00001d039371_P001	Maize	mitochondrion	18.43	16.99
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	7.49	16.39
PGSC0003DMT400010453	Potato	nucleus, plastid	9.4	16.07
PGSC0003DMT400063327	Potato	nucleus, plastid	10.56	15.99
OQU86111	Sorghum	plastid	18.43	15.31
PGSC0003DMT400010380	Potato	nucleus	8.06	15.05
PGSC0003DMT400019324	Potato	nucleus	10.36	14.17
PGSC0003DMT400002153	Potato	nucleus	9.4	13.84
Zm00001d012725_P002	Maize	plastid	17.85	13.32
HORVU0Hr1G006890.2	Barley	cytosol	5.18	12.56
PGSC0003DMT400014572	Potato	nucleus	9.02	12.43

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M1CJ41
PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400026626	PGSC:PGSC0003DMG400026626	EnsemblPlants:PGSC0003DMT400068478	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00029519E9	SEG:seg	:

Description

Mutant cincinnata [Source:PGSC_GENE;Acc:PGSC0003DMG400026626]

Coordinates

chr10:+:4429804..4431767

Molecular Weight (calculated)

59689.5 Da

IEP (calculated)

7.321

GRAVY (calculated)

-1.091

Length

521 amino acids

Sequence
(BLAST)

001: MNHQLQVSNE NEDKSSSQQE DDDDENKDEF FHEILQSDYQ HLQQWPNYFT APSATLVPKH QNNTQCPSHK DETKKVSLKR KPKRAKKDVM EVHGSRIVRA
101: TGRKDRHSKV STATGPKDRR VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKEAQRAINA LEKTPFQVFS NKIDSTNKAL NVRNEEGQFA LEQSWSVDKK
201: TELEELARHS TKLNATMQHS ADQFPEGCYK EQSSKVCQAN ATQIVNSSAN GSKIQSFCEF QTHPQAHFHS QTKRQSPNDA KIQSFCEYQT HPQSHFQSET
301: KKQSPNVAKT QSFCELQTHP QAHFHSQTKK QPTNDAKIQS FWELQTHPQG HFQSETKNQS PNVAKTQSFC ELQTYPQGQF HSETKRQSAK DAKIQSFCEL
401: QTYPQGHFHS ETKNQSAQLG NFFSFQSCHQ NESISFSGDH HHHGFNFSPQ NFPTVLGQNQ MFNYLREPLQ STSTFPQTIS YSNNIGFAND GLLGLCTTPI
501: TQQEEEDEQG SISTTLLHYQ D

Best Arabidopsis Sequence Match ( AT2G31070.1 )
(BLAST)

001: MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KTAIDKLELG ETTTTTTRQE
101: PVNTKPESPT LVFQRENNDQ TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL GLSLHPFQGN NNTVVVPETN
201: NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
301: TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH L

Arabidopsis Description

TCP10Transcription factor TCP10 [Source:UniProtKB/Swiss-Prot;Acc:O82277]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.