Factsheet for Os01t0213800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0674700-01
Os03t0729500-01
Os12t0484900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	Os03t0674700-01	AT2G22840.1	21245844
AT2G31070.1	Os03t0729500-01	AT2G22840.1	21245844
AT2G31070.1	Os12t0484900-01	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G164500.1	Wheat	nucleus	63.9	82.22
TraesCS3D01G146900.1	Wheat	nucleus	64.08	81.72
TraesCS3A01G140100.1	Wheat	nucleus	63.56	80.53
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	79.45	77.97
Zm00001d008919_P001	Maize	nucleus, plastid	56.65	77.18
Zm00001d039371_P001	Maize	mitochondrion	75.3	77.17
OQU86111	Sorghum	plastid	77.37	71.45
GSMUA_Achr10P...	Banana	nucleus	23.83	55.42
GSMUA_Achr10P...	Banana	nucleus	24.87	54.34
VIT_19s0014g01680.t01	Wine grape	nucleus	35.75	52.01
KRH27317	Soybean	nucleus	32.47	49.87
Solyc07g062680.1.1	Tomato	nucleus	33.85	49.0
GSMUA_Achr6P14430_001	Banana	nucleus	20.21	48.75
PGSC0003DMT400032269	Potato	nucleus	33.68	48.75
KRH26201	Soybean	nucleus	33.33	48.61
KRH55125	Soybean	nucleus	32.47	48.08
GSMUA_Achr3P03540_001	Banana	nucleus	32.82	47.26
KRH21998	Soybean	nucleus	31.61	46.56
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	37.48	46.07
KRH22307	Soybean	nucleus	26.77	45.06
KRH27017	Soybean	nucleus	26.6	44.9
Bra021586.1-P	Field mustard	nucleus	26.42	43.71
AT3G15030.1	Thale cress	nucleus	31.61	43.57
PGSC0003DMT400039786	Potato	nucleus	31.61	43.47
Solyc12g014140.1.1	Tomato	nucleus	29.19	42.89
AT1G53230.1	Thale cress	nucleus	28.84	42.71
Bra027284.1-P	Field mustard	nucleus	29.71	42.36
KRH25697	Soybean	nucleus	21.24	42.27
Bra001579.1-P	Field mustard	nucleus	29.71	42.26
Solyc07g053410.2.1	Tomato	cytosol	17.44	41.39
Bra030952.1-P	Field mustard	nucleus	24.35	40.87
VIT_12s0028g02520.t01	Wine grape	nucleus	21.59	40.72
PGSC0003DMT400024329	Potato	nucleus	21.07	39.23
Bra018280.1-P	Field mustard	nucleus	23.32	38.68
KRH55819	Soybean	nucleus	21.93	38.14
AT2G31070.1	Thale cress	nucleus	23.49	37.67
Solyc05g012840.1.1	Tomato	nucleus	14.51	37.67
Solyc10g018710.1.1	Tomato	nucleus	10.88	36.84
Os01t0755500-01	Rice	cytosol, mitochondrion	27.12	35.2
Solyc11g045640.1.1	Tomato	nucleus	11.92	31.51
Solyc05g032780.1.1	Tomato	nucleus	11.4	31.13
VIT_10s0003g00870.t01	Wine grape	nucleus	20.03	30.37
PGSC0003DMT400059117	Potato	nucleus	17.44	30.24
Solyc02g077250.2.1	Tomato	nucleus	17.27	28.25
Os03t0785800-01	Rice	nucleus	16.93	27.45
Os01t0763200-01	Rice	cytosol	11.57	21.82
Os05t0513100-01	Rice	nucleus	11.05	21.77
Os07t0152000-01	Rice	nucleus	16.23	21.12
Os09t0410500-00	Rice	nucleus	8.98	19.26
PGSC0003DMT400068478	Potato	nucleus	17.27	19.19
Solyc10g008780.1.1	Tomato	nucleus	17.62	17.53
Os08t0432300-00	Rice	nucleus	8.29	16.22
Os03t0706500-01	Rice	nucleus	9.84	14.69
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	5.18	14.42

Protein Annotations

MapMan:15.5.19	UniProt:A0A0P0UZL2	ProteinID:BAS71006.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	EnsemblPlantsGene:Os01g0213800	EnsemblPlants:Os01t0213800-01	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF66	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000393B0B3	SEG:seg

Description

PROLIFERATING CELL FACTOR 5Similar to Transcription factor PCF5. (Os01t0213800-01)

Coordinates

chr1:-:6221640..6224153

Molecular Weight (calculated)

59855.6 Da

IEP (calculated)

7.246

GRAVY (calculated)

-0.643

Length

579 amino acids

Sequence
(BLAST)

001: SSLVPHSSPG YGIRRGGWTR IGAATVAAGK KAAGDLDPRH HHHRVTHGGD GGGVGGGGSG GQEEADEQQQ QQHDHHRLLQ LHHHQGVQQD QEPPPVPVFH
101: LQPASVRQLS GSSAEYALLS PMGDAGGHSH HHQHGFQPQL LSFGGVGHHH HLHQFTAQPQ PPAASHTRGR GGGGEIVPAT TTPRSRGGGG GGGGEIVAVQ
201: GGHIVRSTGR KDRHSKVCTA RGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKN AKDAIDKLDV LPAWQPTAGG AGAGNAAAPP SSSTHPDSAE
301: NSDDQAQAIT VAHTAFDFAG GGSGGTSFLP PSLDSDAIAD TIKSFFPMGG TAGGEASSST TAAQSSAMGF QSYTPDLLSR TGSQSQELRL SLQSLPDPMF
401: HHQQHRHGGG GGGGNGTTQQ ALFSGAANYS FGGGAMWATE QQAQNQRMLP WNVPDPGGGG GAAYLFNVSQ QAAHMQAAAA ALGGHQSQFF FQRGPLQSSN
501: QPSERGWPET VEADNQMSHH QGGLSPSVSA AIGFAAPGIG FSGFRLPARI QGDEEHNGGG GGNGDKPPPP SSVSSASHH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.