CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55125	Soybean	nucleus	89.17	90.54
GSMUA_Achr8P19990_001	Banana	nucleus	35.52	58.51
KRH27317	Soybean	nucleus	50.38	53.05
KRH21998	Soybean	nucleus	50.38	50.89
KRH22307	Soybean	nucleus	41.31	47.67
KRH27017	Soybean	nucleus	40.3	46.65
KRH25697	Soybean	nucleus	32.75	44.67
TraesCS3B01G164500.1	Wheat	nucleus	46.85	41.33
TraesCS3D01G146900.1	Wheat	nucleus	46.85	40.97
Zm00001d008919_P001	Maize	nucleus, plastid	43.83	40.94
TraesCS3A01G140100.1	Wheat	nucleus	46.85	40.7
KRH55819	Soybean	nucleus	33.75	40.24
Os01t0213800-01	Rice	mitochondrion	48.61	33.33
Zm00001d039371_P001	Maize	mitochondrion	46.6	32.74
KXG33398	Sorghum	nucleus	36.52	32.15
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	47.1	31.69
Zm00001d043423_P001	Maize	nucleus	34.01	31.11
OQU86111	Sorghum	plastid	48.11	30.46
Os01t0755500-01	Rice	cytosol, mitochondrion	33.5	29.82
HORVU0Hr1G006890.2	Barley	cytosol	11.84	21.86
KRH42567	Soybean	nucleus	24.43	20.73
KRH58674	Soybean	nucleus	24.43	20.29
KRG93654	Soybean	nucleus	18.64	19.79
Zm00001d012725_P002	Maize	plastid	34.51	19.63
KRH63215	Soybean	nucleus, plastid	18.89	19.38
KRH54711	Soybean	plastid	18.89	19.23
KRH11155	Soybean	nucleus	24.69	19.18
KRH21093	Soybean	nucleus	24.94	18.61
KRH45058	Soybean	nucleus	15.87	17.75
KRH01308	Soybean	cytosol	16.88	17.45
KRH56798	Soybean	nucleus	17.13	17.39
KRH03150	Soybean	nucleus, plastid	16.88	17.22
KRH56692	Soybean	nucleus	15.11	15.96
KRH03810	Soybean	nucleus	14.61	15.26
KRH63057	Soybean	nucleus	13.6	14.03
KRH45185	Soybean	plastid	12.85	13.78
KRH01497	Soybean	plastid	12.85	13.78
KRH54810	Soybean	nucleus	13.35	13.38
KRH18263	Soybean	plastid	13.1	12.41
KRG91334	Soybean	nucleus	11.59	12.27
KRG93829	Soybean	nucleus, plastid	12.85	12.26
KRH35497	Soybean	nucleus	11.34	11.84

Protein Annotations

EntrezGene:100800275	MapMan:15.5.19	EMBL:ACUP02007599	EnsemblPlantsGene:GLYMA_12G158900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:K7LUU9	EnsemblPlants:KRH26201	ProteinID:KRH26201	ProteinID:KRH26201.1
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI000296AD0A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:26907587..26910452

Molecular Weight (calculated)

43141.7 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.693

Length

397 amino acids

Sequence
(BLAST)

001: MGEPQHPHQH HQQAAATPSR AAMRGGGGGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI
101: DQLAELPPWN PTATPMQPPS QEIVHRENKS LGMDDSLTAF SCRGESPAFA AATRDSEQFS HPQVEQNENA NNISSSSISI KYNSGSGFLP ASLDTDNIAE
201: TIKTFFPVEA TTTSFQSYPP APPDLGQQDL RLSLQSFQDP IMLHHQPQSH HEPVLFAGTA AAALGFDGGY GWSEHQHQNH HSEEQRLLYA GGNSGHGGGF
301: VFNTPAPVPA FGQFFSQRGP LQSSNTPSIR AWIDPSVDHH HHHHHYLSQL IHQGSVAGGS GFSSGFSGFR IPARIQGEEE HDGVSDKPSS ASSDSRH

Best Arabidopsis Sequence Match ( AT1G53230.2 )
(BLAST)

001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H

Arabidopsis Description

TCP3TCP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.