CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56692	Soybean	nucleus	88.42	89.36
KRH63057	Soybean	nucleus	51.58	50.91
KRH54810	Soybean	nucleus	51.05	48.99
VIT_17s0000g04180.t01	Wine grape	nucleus	34.21	35.52
PGSC0003DMT400010380	Potato	nucleus	22.89	31.18
CDY18525	Canola	nucleus	20.53	27.56
Bra037579.1-P	Field mustard	nucleus	20.53	27.37
CDX95517	Canola	nucleus	20.26	27.21
Solyc03g119770.2.1	Tomato	nucleus	24.74	27.17
TraesCS5D01G002300.1	Wheat	nucleus	18.16	26.14
TraesCS5A01G001900.1	Wheat	nucleus	18.68	26.01
PGSC0003DMT400014572	Potato	nucleus	24.74	24.87
KRH01497	Soybean	plastid	23.95	24.59
TraesCS5B01G002300.1	Wheat	nucleus	18.68	24.07
HORVU5Hr1G000490.1	Barley	nucleus	18.68	23.91
KRH45185	Soybean	plastid	23.16	23.78
TraesCS4B01G042700.1	Wheat	nucleus	21.58	23.16
TraesCS4A01G271300.1	Wheat	nucleus	21.32	23.01
KRH18263	Soybean	plastid	25.26	22.91
Solyc06g069240.1.1	Tomato	nucleus	24.47	22.91
KRG93829	Soybean	nucleus, plastid	25.0	22.84
TraesCS4D01G040100.1	Wheat	nucleus	20.79	22.44
KRH35497	Soybean	nucleus	22.37	22.37
KRG91334	Soybean	nucleus	21.84	22.13
HORVU4Hr1G007040.1	Barley	nucleus	20.79	22.13
Zm00001d013467_P001	Maize	nucleus	20.26	21.45
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	21.32	21.32
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	20.26	21.04
Os03t0706500-01	Rice	nucleus	21.32	20.88
CDX82339	Canola	nucleus	22.11	19.81
Bra001710.1-P	Field mustard	nucleus	22.11	19.76
CDY52898	Canola	nucleus	22.11	19.76
AT3G18550.3	Thale cress	nucleus	22.37	19.59
CDY62798	Canola	nucleus	20.79	19.22
KRH22307	Soybean	nucleus	15.26	16.86
KRH27017	Soybean	nucleus	15.0	16.62
KRH25697	Soybean	nucleus	12.63	16.49
KRH55125	Soybean	nucleus	16.32	15.86
KRH55819	Soybean	nucleus	13.42	15.32
KRH27317	Soybean	nucleus	14.74	14.85
KRH45058	Soybean	nucleus	13.68	14.65
KRH26201	Soybean	nucleus	15.26	14.61
KRH21998	Soybean	nucleus	15.0	14.5
KRG93654	Soybean	nucleus	13.68	13.9
KRH01308	Soybean	cytosol	13.68	13.54
KRH58674	Soybean	nucleus	16.84	13.39
KRH56798	Soybean	nucleus	13.68	13.3
KRH42567	Soybean	nucleus	16.05	13.03
KRH03150	Soybean	nucleus, plastid	12.89	12.6
KRH11155	Soybean	nucleus	16.84	12.52
KRH54711	Soybean	plastid	12.63	12.31
KRH21093	Soybean	nucleus	16.58	11.84
KRH63215	Soybean	nucleus, plastid	11.84	11.63

Protein Annotations

EntrezGene:100803395	MapMan:15.5.19	EMBL:ACUP02010363	InterPro:CYC/TB1_R_domain	EnsemblPlantsGene:GLYMA_17G121500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	UniProt:K7MLA9	EnsemblPlants:KRH03810
ProteinID:KRH03810	ProteinID:KRH03810.1	ProteinID:KRH03811.1	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370
PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00023D6515	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:9698161..9700535

Molecular Weight (calculated)

43110.4 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.807

Length

380 amino acids

Sequence
(BLAST)

001: MYSSNTFLNG NDLISYPNQP FCFRPFSFES NPTYNFSKEE ANSNYALPPP PPPPPLSFFQ SPFDENIFLE HHHHDLLLLH QYSLTDSGVS KNLEVVAEIS
101: PIPCPEQGGI AMEHTPRKRS SKRDRHSKIN TARGLRDRRM RLSLEVAKRF FGLQDMLGFD KASKTVEWLL NQAKGEIKQL AREKTSVVGG GGKSASSTSE
201: CEGVSSLDEV AVSTGGVNNE EQERETVPNM MKRRKSKVCR KSAFNAIDKE SREKARERAR ERTREKMRTR RVLVSDASNL NRLSSWNPFE TVEDSAGTTH
301: HPSLDVHLHE ADQEPISSHN VKEHNLGEDM AHEDNSLALM NKWSPTMLFN SLHNSGILQE HQFAEFQSLG KQWEAYSNQI

Best Arabidopsis Sequence Match ( AT3G18550.3 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.