CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013467_P001	Maize	nucleus	80.0	84.68
TraesCS4D01G040100.1	Wheat	nucleus	57.89	62.5
TraesCS4A01G271300.1	Wheat	nucleus	57.63	62.22
TraesCS4B01G042700.1	Wheat	nucleus	57.89	62.15
Os03t0706500-01	Rice	nucleus	61.84	60.57
HORVU4Hr1G007040.1	Barley	nucleus	56.32	59.94
EER96723	Sorghum	nucleus	23.16	32.84
EES13882	Sorghum	cytosol	22.11	32.68
OQU89064	Sorghum	cytosol	6.32	30.0
GSMUA_Achr2P21050_001	Banana	mitochondrion	18.95	27.59
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	17.11	27.31
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	16.84	26.56
PGSC0003DMT400010380	Potato	nucleus	18.95	25.81
PGSC0003DMT400008673	Potato	nucleus	10.53	25.48
Solyc03g045030.1.1	Tomato	nucleus	12.11	25.14
GSMUA_Achr2P22480_001	Banana	cytosol	20.0	23.46
CDX95517	Canola	nucleus	16.84	22.61
CDY18525	Canola	nucleus	16.84	22.61
Bra037579.1-P	Field mustard	nucleus	16.84	22.46
CDY33597	Canola	nucleus	18.95	22.29
VIT_14s0083g00150.t01	Wine grape	nucleus	19.21	22.12
CDY45852	Canola	nucleus	19.21	21.99
CDX81550	Canola	nucleus	19.47	21.89
Bra038350.1-P	Field mustard	nucleus	19.21	21.79
KRH56692	Soybean	nucleus	21.32	21.54
KRH03810	Soybean	nucleus	21.32	21.32
Solyc06g069240.1.1	Tomato	nucleus	21.58	20.2
VIT_17s0000g04180.t01	Wine grape	nucleus	19.21	19.95
AT1G68800.2	Thale cress	nucleus	18.68	19.61
AT1G67260.1	Thale cress	nucleus	18.42	19.5
KRH63057	Soybean	nucleus	19.74	19.48
KRH01497	Soybean	plastid	18.95	19.46
KRH45185	Soybean	plastid	18.95	19.46
Solyc03g119770.2.1	Tomato	nucleus	17.63	19.36
CDY01793	Canola	nucleus	17.89	19.26
Solyc04g006980.1.1	Tomato	nucleus	18.95	19.2
PGSC0003DMT400019324	Potato	nucleus	19.21	19.16
CDX96104	Canola	nucleus	17.63	19.09
CDY12633	Canola	nucleus	16.05	18.94
Bra004212.1-P	Field mustard	nucleus	16.84	18.77
VIT_01s0011g02920.t01	Wine grape	nucleus	21.58	18.72
PGSC0003DMT400014572	Potato	nucleus	18.42	18.52
KRG93829	Soybean	nucleus, plastid	20.26	18.51
KRH54810	Soybean	nucleus	19.21	18.43
Bra034010.1-P	Field mustard	nucleus	16.58	18.21
CDY46042	Canola	nucleus	16.58	18.21
KRH35497	Soybean	nucleus	18.16	18.16
KRG91334	Soybean	nucleus	17.89	18.13
AT3G18550.3	Thale cress	nucleus	20.53	17.97
CDX82339	Canola	nucleus	20.0	17.92
KRH18263	Soybean	plastid	19.74	17.9
Bra001710.1-P	Field mustard	nucleus	20.0	17.88
CDY62798	Canola	nucleus	19.21	17.76
CDY52898	Canola	nucleus	19.74	17.65
CDY07432	Canola	nucleus	16.32	17.61
Solyc05g009900.1.1	Tomato	nucleus	16.32	17.56
CDY28898	Canola	nucleus	16.05	17.23
Bra004097.1-P	Field mustard	nucleus	15.53	17.0
PGSC0003DMT400002153	Potato	nucleus	15.53	16.67
EES16387	Sorghum	cytosol, nucleus, plastid	11.32	14.24
EES03657	Sorghum	nucleus	10.0	13.15
KXG37409	Sorghum	cytosol	13.42	13.11
EER95875	Sorghum	cytosol, nucleus, peroxisome	15.53	12.8
EES18493	Sorghum	cytosol	9.47	12.08
KXG33398	Sorghum	nucleus	13.68	11.53
OQU86111	Sorghum	plastid	15.26	9.25

Protein Annotations

MapMan:15.5.19	EntrezGene:8062930	UniProt:C5WNR6	InterPro:CYC/TB1_R_domain	EnsemblPlants:EER93595	ProteinID:EER93595
ProteinID:EER93595.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0048831
InterPro:IPR017887	InterPro:IPR017888	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072
PANTHER:PTHR31072:SF39	EnsemblPlantsGene:SORBI_3001G121600	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A828AF	RefSeq:XP_002466597.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:9467734..9468876

Molecular Weight (calculated)

40861.9 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.614

Length

380 amino acids

Sequence
(BLAST)

001: MFPFCDSSSP MDLPLYQQLQ LSPPSPKPDQ SSSFYCCYPC SPPFAAAAAD ASFHLSYQIG SAAAAIPPQA VINSPEDLPV QPLMEQAPAP PTELVACASG
101: GAQGAGVSVS LDRAAAAAAA RKDRHSKICT AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN TSKAAIQEIM ADDVDASSEC VEDGSSSLSV
201: DGKHNPAEQL GDQKPKGNGR SEGKKPAKSR KAATTPKPPR KSGNNAHPVP DKETRAKARE RARERTKEKH RMRWVKLASA IDVEAAAASV ASDRPSSNHL
301: NHHHHSSSSM NMPRAAEAEL EERERCSSTL NNRGRMQEIT GASEVVLGFG NGGGYGGGNY YCQEQWELGG VVFQQNSRFY

Best Arabidopsis Sequence Match ( AT3G18550.2 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.