Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96104 | Canola | nucleus | 90.08 | 90.6 |
| CDY12633 | Canola | nucleus | 73.09 | 80.12 |
| CDY46042 | Canola | nucleus | 78.47 | 80.06 |
| CDY07432 | Canola | nucleus | 75.92 | 76.14 |
| CDY28898 | Canola | nucleus | 75.64 | 75.42 |
| AT1G67260.1 | Thale cress | nucleus | 74.22 | 72.98 |
| PGSC0003DMT400008673 | Potato | nucleus | 13.03 | 29.3 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 18.98 | 28.15 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 18.98 | 27.8 |
| Solyc03g045030.1.1 | Tomato | nucleus | 13.88 | 26.78 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 24.08 | 25.76 |
| KRH01497 | Soybean | plastid | 23.51 | 22.43 |
| KRH45185 | Soybean | plastid | 23.23 | 22.16 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 16.43 | 21.97 |
| CDY33597 | Canola | nucleus | 19.55 | 21.36 |
| CDY45852 | Canola | nucleus | 19.83 | 21.08 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 16.15 | 20.88 |
| CDX81550 | Canola | nucleus | 19.55 | 20.41 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 20.4 | 20.17 |
| CDY18525 | Canola | nucleus | 16.15 | 20.14 |
| CDY26285 | Canola | nucleus | 18.13 | 20.13 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 20.11 | 20.06 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 16.71 | 20.0 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 19.83 | 19.89 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 19.83 | 19.89 |
| CDX99891 | Canola | nucleus | 17.85 | 19.87 |
| KRG91334 | Soybean | nucleus | 20.96 | 19.73 |
| KRH18263 | Soybean | plastid | 23.23 | 19.57 |
| KRG93829 | Soybean | nucleus, plastid | 22.95 | 19.47 |
| CDX95517 | Canola | nucleus | 15.58 | 19.43 |
| CDY60877 | Canola | nucleus | 19.55 | 19.27 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 17.56 | 18.79 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 15.58 | 18.52 |
| KRH35497 | Soybean | nucleus | 19.83 | 18.42 |
| CDY59229 | Canola | nucleus | 16.15 | 18.21 |
| CDX90234 | Canola | nucleus | 15.86 | 18.18 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 18.7 | 18.03 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 19.26 | 17.89 |
| Zm00001d013467_P001 | Maize | nucleus | 17.85 | 17.55 |
| Os03t0706500-01 | Rice | nucleus | 18.98 | 17.27 |
| CDY01537 | Canola | nucleus | 15.01 | 17.26 |
| CDY55633 | Canola | nucleus | 18.41 | 17.02 |
| CDX81083 | Canola | nucleus, plastid | 11.61 | 16.8 |
| CDX78321 | Canola | nucleus, plastid | 11.61 | 16.67 |
| CDY20097 | Canola | nucleus | 16.71 | 16.53 |
| CDY02519 | Canola | nucleus | 15.58 | 15.99 |
| CDY68596 | Canola | cytosol, nucleus | 16.71 | 15.29 |
| CDY47005 | Canola | nucleus, plastid | 13.03 | 15.28 |
| CDX74272 | Canola | nucleus | 13.6 | 15.0 |
| CDX91977 | Canola | nucleus | 13.6 | 15.0 |
| CDY68618 | Canola | nucleus, plastid | 12.75 | 14.9 |
| CDX82453 | Canola | nucleus | 17.0 | 14.81 |
| CDX75802 | Canola | nucleus | 16.71 | 14.6 |
| CDY62798 | Canola | nucleus | 16.71 | 14.36 |
| CDY58696 | Canola | nucleus | 14.73 | 14.29 |
| CDY10772 | Canola | nucleus | 13.88 | 14.16 |
| CDX82339 | Canola | nucleus | 17.0 | 14.15 |
| CDY10771 | Canola | nucleus | 13.88 | 14.12 |
| CDY52898 | Canola | nucleus | 17.0 | 14.12 |
| CDY24724 | Canola | nucleus | 13.88 | 14.08 |
| CDY02180 | Canola | nucleus | 14.45 | 13.93 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 14.45 | 12.85 |
| CDX78849 | Canola | nucleus, plastid | 7.93 | 11.72 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 14.16 | 11.65 |
| CDX97627 | Canola | mitochondrion | 5.1 | 6.57 |
Protein Annotations
| EnsemblPlants:CDY01793 | EnsemblPlantsGene:GSBRNA2T00112929001 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | ncoils:Coil | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | PFAM:PF03634 | PFscan:PS51369 |
| PFscan:PS51370 | ProteinID:CDY01793 | ProteinID:CDY01793.1 | SEG:seg | UniParc:UPI0004EE591D | MapMan:15.5.19 |
Description
BnaC06g28330D
Coordinates
chrLK031929:-:302272..303333
Molecular Weight (calculated)
40347.3 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.859
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNNDYNN GNNGVYPFSL YLSPLAGHQD IIRNPYNHQP TPSPGQMVSA VPESLINYMS FSSNRAVNQQ GFEIPEVSRE IKKVVKKDRH SKIQTGQGLR
101: DRRVRLSIGI ARQFFDLQDM LGFDKASKTL DWLLKKSRRA IKELVQEKKV NTDEDFANIG GEVEEEEDDG DKSFVYGSSP DSLEEEMVCE VKKAQKRKKK
201: IELRNISSKG SRAKARRKAK EITREMTYDH PETISEITQT ETMDPLKRST IFNEGEDMTH SLYKEATQEF DSQECTLSKA KVNLPTNMDQ SYNQHYGTFM
301: LKDQGSSSNY NNILPQNLDF YYDQNPFIDQ PFCAVTKTNF PRGKVLIQVS DLA
101: DRRVRLSIGI ARQFFDLQDM LGFDKASKTL DWLLKKSRRA IKELVQEKKV NTDEDFANIG GEVEEEEDDG DKSFVYGSSP DSLEEEMVCE VKKAQKRKKK
201: IELRNISSKG SRAKARRKAK EITREMTYDH PETISEITQT ETMDPLKRST IFNEGEDMTH SLYKEATQEF DSQECTLSKA KVNLPTNMDQ SYNQHYGTFM
301: LKDQGSSSNY NNILPQNLDF YYDQNPFIDQ PFCAVTKTNF PRGKVLIQVS DLA
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN
Arabidopsis Description
TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.