Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030952.1-P | Field mustard | nucleus | 98.55 | 98.26 |
| AT1G53230.1 | Thale cress | nucleus | 71.51 | 62.92 |
| CDY68596 | Canola | cytosol, nucleus | 58.72 | 52.33 |
| CDY20097 | Canola | nucleus | 54.07 | 52.1 |
| CDX82453 | Canola | nucleus | 58.43 | 49.63 |
| CDX75802 | Canola | nucleus | 58.14 | 49.51 |
| CDX97627 | Canola | mitochondrion | 34.59 | 43.43 |
| CDY10772 | Canola | nucleus | 35.47 | 35.26 |
| CDY10771 | Canola | nucleus | 35.47 | 35.16 |
| CDY24724 | Canola | nucleus | 35.47 | 35.06 |
| VIT_10s0003g00870.t01 | Wine grape | nucleus | 31.69 | 28.53 |
| CDX90234 | Canola | nucleus | 19.77 | 22.08 |
| CDY59229 | Canola | nucleus | 19.77 | 21.73 |
| CDX78321 | Canola | nucleus, plastid | 15.41 | 21.54 |
| CDX81083 | Canola | nucleus, plastid | 14.83 | 20.9 |
| CDY01537 | Canola | nucleus | 18.6 | 20.85 |
| CDY60877 | Canola | nucleus | 21.51 | 20.67 |
| CDY55633 | Canola | nucleus | 22.09 | 19.9 |
| CDX99891 | Canola | nucleus | 18.31 | 19.87 |
| CDY26285 | Canola | nucleus | 18.31 | 19.81 |
| CDX91977 | Canola | nucleus | 17.73 | 19.06 |
| CDX74272 | Canola | nucleus | 17.73 | 19.06 |
| CDY68618 | Canola | nucleus, plastid | 15.41 | 17.55 |
| CDY47005 | Canola | nucleus, plastid | 15.12 | 17.28 |
| CDY02180 | Canola | nucleus | 18.02 | 16.94 |
| CDY58696 | Canola | nucleus | 17.44 | 16.48 |
| CDY12633 | Canola | nucleus | 15.12 | 16.15 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 18.02 | 15.62 |
| CDY01793 | Canola | nucleus | 15.99 | 15.58 |
| CDX96104 | Canola | nucleus | 15.41 | 15.1 |
| CDY07432 | Canola | nucleus | 15.41 | 15.06 |
| CDY46042 | Canola | nucleus | 15.12 | 15.03 |
| CDY28898 | Canola | nucleus | 15.41 | 14.97 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 18.02 | 14.45 |
| CDY45852 | Canola | nucleus | 13.66 | 14.16 |
| CDX81550 | Canola | nucleus | 13.66 | 13.91 |
| CDY33597 | Canola | nucleus | 12.21 | 13.0 |
| CDX95517 | Canola | nucleus | 9.59 | 11.66 |
| CDY18525 | Canola | nucleus | 9.59 | 11.66 |
| CDX78849 | Canola | nucleus, plastid | 6.98 | 10.04 |
| CDY52898 | Canola | nucleus | 11.34 | 9.18 |
| CDX82339 | Canola | nucleus | 11.05 | 8.96 |
| CDY62798 | Canola | nucleus | 10.47 | 8.76 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlants:CDY02519 | ProteinID:CDY02519 | ProteinID:CDY02519.1 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0045962 | GO:GO:0048366 | EnsemblPlantsGene:GSBRNA2T00114181001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EE9F34 | SEG:seg |
Description
BnaA08g01260DTranscription factor TCP3 [Source:Projected from Arabidopsis thaliana (AT1G53230) UniProtKB/Swiss-Prot;Acc:Q9MAH8]
Coordinates
chrLK031935:+:671030..672363
Molecular Weight (calculated)
37476.1 Da
IEP (calculated)
7.254
GRAVY (calculated)
-0.795
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEESNHHH SIHSPSSPHP LGMRHQSVFS TAAEHGGCGE IVEVEGGHIV RSTGKKDRHS KVCTAKGPRD RRVRLSAPTA IQFYDVQDRL GLDRPSKAVD
101: WLIMKAKSAI DNLAELPPWN PADTTRQAAA NKPKRPKTVI PPPETGIHGG SGEETERHHQ SSFLPASVST PHYHPPPSSR ANAQSQDLRL SLHSFQNGPA
201: FADETEHALF SGQSNPLVFD SSTASCDQSP EFGKMQRLVT WNNGGAADSA AFGGGGFVFA SPATTTSFQP QSQVFSQRGP LQSINTPMPP RAWFDPYHDH
301: HHNHHHHPYH ISPAIHQSAI PARYLSEEDG HGDKPSSASS DSRH
101: WLIMKAKSAI DNLAELPPWN PADTTRQAAA NKPKRPKTVI PPPETGIHGG SGEETERHHQ SSFLPASVST PHYHPPPSSR ANAQSQDLRL SLHSFQNGPA
201: FADETEHALF SGQSNPLVFD SSTASCDQSP EFGKMQRLVT WNNGGAADSA AFGGGGFVFA SPATTTSFQP QSQVFSQRGP LQSINTPMPP RAWFDPYHDH
301: HHNHHHHPYH ISPAIHQSAI PARYLSEEDG HGDKPSSASS DSRH
001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H
Arabidopsis Description
TCP3TCP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDV9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.