Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52898 | Canola | nucleus | 76.89 | 74.35 |
| CDX82339 | Canola | nucleus | 76.4 | 74.06 |
| AT3G18550.3 | Thale cress | nucleus | 71.53 | 67.74 |
| CDY18525 | Canola | nucleus | 46.47 | 67.49 |
| CDX95517 | Canola | nucleus | 46.23 | 67.14 |
| PGSC0003DMT400010380 | Potato | nucleus | 16.79 | 24.73 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 16.3 | 24.54 |
| CDY33597 | Canola | nucleus | 18.25 | 23.22 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 16.55 | 23.05 |
| CDY45852 | Canola | nucleus | 18.49 | 22.89 |
| Solyc03g119770.2.1 | Tomato | nucleus | 19.22 | 22.83 |
| CDX81550 | Canola | nucleus | 18.73 | 22.78 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 14.6 | 22.73 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 20.19 | 22.68 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 15.82 | 21.89 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 18.0 | 20.9 |
| KRH03810 | Soybean | nucleus | 19.22 | 20.79 |
| KRH56692 | Soybean | nucleus | 18.98 | 20.74 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 17.76 | 20.74 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 17.76 | 20.74 |
| PGSC0003DMT400014572 | Potato | nucleus | 18.98 | 20.63 |
| KRH63057 | Soybean | nucleus | 18.98 | 20.26 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 17.27 | 19.89 |
| Solyc06g069240.1.1 | Tomato | nucleus | 19.22 | 19.46 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 17.27 | 19.4 |
| Zm00001d013467_P001 | Maize | nucleus | 16.79 | 19.22 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 17.76 | 19.21 |
| Os03t0706500-01 | Rice | nucleus | 17.52 | 18.56 |
| KRH54810 | Soybean | nucleus | 17.76 | 18.43 |
| CDY01793 | Canola | nucleus | 14.36 | 16.71 |
| CDX96104 | Canola | nucleus | 14.11 | 16.52 |
| CDY12633 | Canola | nucleus | 12.9 | 16.46 |
| CDX99891 | Canola | nucleus | 12.41 | 16.09 |
| CDY07432 | Canola | nucleus | 13.63 | 15.91 |
| CDY26285 | Canola | nucleus | 12.17 | 15.72 |
| CDY46042 | Canola | nucleus | 13.14 | 15.61 |
| CDY28898 | Canola | nucleus | 13.38 | 15.54 |
| CDX81083 | Canola | nucleus, plastid | 8.76 | 14.75 |
| CDY59229 | Canola | nucleus | 11.19 | 14.7 |
| CDX90234 | Canola | nucleus | 10.71 | 14.29 |
| CDY60877 | Canola | nucleus | 12.41 | 14.25 |
| CDX78321 | Canola | nucleus, plastid | 8.52 | 14.23 |
| CDY01537 | Canola | nucleus | 10.22 | 13.68 |
| CDX74272 | Canola | nucleus | 10.46 | 13.44 |
| CDX91977 | Canola | nucleus | 10.46 | 13.44 |
| CDY47005 | Canola | nucleus, plastid | 9.49 | 12.96 |
| CDY68618 | Canola | nucleus, plastid | 9.49 | 12.91 |
| CDY58696 | Canola | nucleus | 11.44 | 12.91 |
| CDY55633 | Canola | nucleus | 11.68 | 12.57 |
| CDY02180 | Canola | nucleus | 10.95 | 12.3 |
| CDY10771 | Canola | nucleus | 9.73 | 11.53 |
| CDY24724 | Canola | nucleus | 9.73 | 11.49 |
| CDY10772 | Canola | nucleus | 9.49 | 11.27 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 10.46 | 10.83 |
| CDY02519 | Canola | nucleus | 8.76 | 10.47 |
| CDY68596 | Canola | cytosol, nucleus | 9.73 | 10.36 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 10.71 | 10.26 |
| CDY20097 | Canola | nucleus | 8.76 | 10.08 |
| CDX75802 | Canola | nucleus | 9.73 | 9.9 |
| CDX82453 | Canola | nucleus | 9.73 | 9.88 |
| CDX78849 | Canola | nucleus, plastid | 4.14 | 7.11 |
| CDX97627 | Canola | mitochondrion | 1.22 | 1.82 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078JD66 | EnsemblPlants:CDY62798 | ProteinID:CDY62798 | ProteinID:CDY62798.1 | InterPro:CYC/TB1_R_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00037616001 | InterPro:IPR017887 | InterPro:IPR017888 |
| PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI0004EDCA1A | SEG:seg | : | : | : |
Description
BnaC05g51920DBnaC05g51920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD66]
Coordinates
chrLK034194:-:9504..11034
Molecular Weight (calculated)
47375.7 Da
IEP (calculated)
9.293
GRAVY (calculated)
-0.893
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDNKTFSTT TTINEEYMLF PYNDHYSSQP LLPFSPCSSI NDILIHSNTS NNHLDHHHHQ YLQAPASPFS HFESVPDFAL LASFLPQKNG HNDNQTITTN
101: DHHHPPSFLP FNNPFGESHL IEPSETKTTH IEDSQRISTS QDPNMKKVKK PSRTDRHSKI KTVKGTRDRR MRLSLDVARE LFGLQDMLGF DKASKTVEWL
201: LTQAKPKIIK IANSLSNKFN HGRFSSCDES QPRPALGLMD TSSDIFELSS MWTVEDRGSN TNMNETRGNK VDRRSVRGKR RMSQPRTPIL KKLSKDARAK
301: ARERAKDRTK EKMMKRSAQV NVVVEEEVHN HHDEIVQKNN KSNVKATPCE ETIQEPLCKN DRFAVCNEIV VDRKYHISDE FNPSFPMLDH HRSQWAASSI
401: EFYRLSQIPI Y
101: DHHHPPSFLP FNNPFGESHL IEPSETKTTH IEDSQRISTS QDPNMKKVKK PSRTDRHSKI KTVKGTRDRR MRLSLDVARE LFGLQDMLGF DKASKTVEWL
201: LTQAKPKIIK IANSLSNKFN HGRFSSCDES QPRPALGLMD TSSDIFELSS MWTVEDRGSN TNMNETRGNK VDRRSVRGKR RMSQPRTPIL KKLSKDARAK
301: ARERAKDRTK EKMMKRSAQV NVVVEEEVHN HHDEIVQKNN KSNVKATPCE ETIQEPLCKN DRFAVCNEIV VDRKYHISDE FNPSFPMLDH HRSQWAASSI
401: EFYRLSQIPI Y
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.