Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G001900.1 | Wheat | nucleus | 82.15 | 89.38 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 77.1 | 86.74 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 83.17 | 83.73 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 40.07 | 33.33 |
| HORVU5Hr1G061270.1 | Barley | nucleus | 22.56 | 24.54 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 21.55 | 24.52 |
| PGSC0003DMT400010380 | Potato | nucleus | 21.55 | 22.94 |
| PGSC0003DMT400008673 | Potato | nucleus | 12.12 | 22.93 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 17.85 | 22.27 |
| Solyc03g045030.1.1 | Tomato | nucleus | 13.13 | 21.31 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 17.17 | 21.16 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 22.9 | 20.99 |
| CDX95517 | Canola | nucleus | 19.53 | 20.49 |
| CDY18525 | Canola | nucleus | 19.53 | 20.49 |
| Bra037579.1-P | Field mustard | nucleus | 19.53 | 20.35 |
| CDY33597 | Canola | nucleus | 21.55 | 19.81 |
| CDY45852 | Canola | nucleus | 21.55 | 19.28 |
| Bra038350.1-P | Field mustard | nucleus | 21.55 | 19.1 |
| CDX81550 | Canola | nucleus | 21.55 | 18.93 |
| KRH56692 | Soybean | nucleus | 23.91 | 18.88 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 20.88 | 18.79 |
| KRH03810 | Soybean | nucleus | 23.91 | 18.68 |
| Solyc03g119770.2.1 | Tomato | nucleus | 21.21 | 18.21 |
| KRH63057 | Soybean | nucleus | 23.57 | 18.18 |
| Solyc06g069240.1.1 | Tomato | nucleus | 24.24 | 17.73 |
| KRH54810 | Soybean | nucleus | 23.57 | 17.68 |
| AT1G68800.2 | Thale cress | nucleus | 21.21 | 17.4 |
| KRH45185 | Soybean | plastid | 21.55 | 17.3 |
| KRH01497 | Soybean | plastid | 21.55 | 17.3 |
| PGSC0003DMT400014572 | Potato | nucleus | 21.89 | 17.2 |
| PGSC0003DMT400019324 | Potato | nucleus | 21.89 | 17.06 |
| Solyc05g009900.1.1 | Tomato | nucleus | 20.2 | 17.0 |
| Solyc04g006980.1.1 | Tomato | nucleus | 21.21 | 16.8 |
| CDY12633 | Canola | nucleus | 17.85 | 16.46 |
| CDY46042 | Canola | nucleus | 18.86 | 16.18 |
| PGSC0003DMT400002153 | Potato | nucleus | 19.19 | 16.1 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 23.57 | 15.98 |
| Bra034010.1-P | Field mustard | nucleus | 18.52 | 15.9 |
| CDY62798 | Canola | nucleus | 21.89 | 15.82 |
| CDY01793 | Canola | nucleus | 18.52 | 15.58 |
| CDX82339 | Canola | nucleus | 22.22 | 15.57 |
| Bra004212.1-P | Field mustard | nucleus | 17.85 | 15.54 |
| Bra001710.1-P | Field mustard | nucleus | 22.22 | 15.53 |
| CDX96104 | Canola | nucleus | 18.18 | 15.38 |
| KRH18263 | Soybean | plastid | 21.55 | 15.27 |
| KRG93829 | Soybean | nucleus, plastid | 21.21 | 15.14 |
| AT1G67260.1 | Thale cress | nucleus | 18.18 | 15.04 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 18.52 | 15.03 |
| KRH35497 | Soybean | nucleus | 19.19 | 15.0 |
| KRG91334 | Soybean | nucleus | 18.86 | 14.93 |
| CDY52898 | Canola | nucleus | 21.21 | 14.82 |
| AT3G18550.3 | Thale cress | nucleus | 21.55 | 14.75 |
| Bra004097.1-P | Field mustard | nucleus | 17.17 | 14.7 |
| CDY07432 | Canola | nucleus | 17.17 | 14.49 |
| CDY28898 | Canola | nucleus | 17.17 | 14.41 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 13.47 | 14.39 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 19.19 | 13.84 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 13.13 | 13.36 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 12.46 | 12.54 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 14.48 | 10.75 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 17.17 | 8.64 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 3.37 | 4.65 |
| HORVU3Hr1G072670.2 | Barley | nucleus | 3.37 | 4.27 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A287Q5L2 | InterPro:CYC/TB1_R_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU5Hr1G000490 | EnsemblPlants:HORVU5Hr1G000490.1 | InterPro:IPR017887 | InterPro:IPR017888 | PFAM:PF03634 | PFscan:PS51369 |
| PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000B4616C3 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:2020800..2022189
Molecular Weight (calculated)
32680.4 Da
IEP (calculated)
9.716
GRAVY (calculated)
-0.769
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: TREGETVMEM EMGMGSLWPH HHQDQVQHPP LPPLPPPSGA QDAFSYYYNY NCNYYPPPFA AAAATDDITP PAVSRSRAST RSRAATRKDR HSKICTAGGM
101: RDRRMRLSLD VARRFFALQD KLGFDKASKT VQWLLDRSTA GINHLAASMS ASMSLSEEDG SVLLDLDNND HATAMAADAE TSKQQEQEHQ TAKPKRRSAP
201: AAPSPRLRKK SSGNNGAAAP VLLPDKASRA RARERARERT KARNRLRSEA PAPAMAGQPV VLPAAAGCSN GYYEEGEQEP WELGGVVFAK PRIQYYY
101: RDRRMRLSLD VARRFFALQD KLGFDKASKT VQWLLDRSTA GINHLAASMS ASMSLSEEDG SVLLDLDNND HATAMAADAE TSKQQEQEHQ TAKPKRRSAP
201: AAPSPRLRKK SSGNNGAAAP VLLPDKASRA RARERARERT KARNRLRSEA PAPAMAGQPV VLPAAAGCSN GYYEEGEQEP WELGGVVFAK PRIQYYY
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
Arabidopsis Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.