Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G062160.1 | |
| HORVU3Hr1G033880.2 | |
| HORVU7Hr1G031190.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30210.1 | HORVU3Hr1G033880.2 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | HORVU7Hr1G031190.2 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | HORVU1Hr1G062160.1 | AT5G13060.1 | 18818695 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G040100.1 | Wheat | nucleus | 95.25 | 95.25 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 95.59 | 94.95 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 94.92 | 93.33 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 63.39 | 61.92 |
| Zm00001d022256_P001 | Maize | nucleus | 61.69 | 56.35 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 40.0 | 31.05 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 39.66 | 30.95 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 38.98 | 30.1 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 38.31 | 29.58 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 36.95 | 28.53 |
| AT1G30210.1 | Thale cress | nucleus | 30.51 | 27.78 |
| PGSC0003DMT400051253 | Potato | nucleus | 31.86 | 27.49 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 37.63 | 26.94 |
| Solyc08g048370.2.1 | Tomato | cytosol | 28.81 | 26.07 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 35.25 | 26.0 |
| Solyc08g048390.1.1 | Tomato | nucleus | 33.9 | 25.84 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 37.97 | 25.23 |
| AT4G18390.1 | Thale cress | nucleus | 30.85 | 24.93 |
| KRH42567 | Soybean | nucleus | 37.63 | 23.72 |
| KRH58674 | Soybean | nucleus | 36.95 | 22.8 |
| KRH11155 | Soybean | nucleus | 38.98 | 22.5 |
| KRH21093 | Soybean | nucleus | 38.98 | 21.62 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 20.34 | 21.58 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 18.98 | 19.18 |
| CDX78849 | Canola | nucleus, plastid | 12.88 | 15.9 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 12.88 | 15.9 |
| HORVU5Hr1G061270.1 | Barley | nucleus | 13.56 | 14.65 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 12.54 | 12.46 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 24.75 | 12.37 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 13.22 | 10.92 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 5.42 | 7.44 |
| HORVU3Hr1G072670.2 | Barley | nucleus | 5.42 | 6.84 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G008340 | EnsemblPlants:HORVU5Hr1G008340.2 |
| InterPro:IPR017887 | UniProt:M0YT05 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF23 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000295B528 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:-:19393873..19397259
Molecular Weight (calculated)
31980.1 Da
IEP (calculated)
7.449
GRAVY (calculated)
-0.547
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEADKDRNS CKRLRAVGGG DSADAWRTFR VARAAAGGKD RHSKVVTSRG LRDRRIRLSV QTAIQFYDIQ DRLGVDQPSK AIEWLIQAAA TAIDGLPSLD
101: CSFGLPVASP AAEDTAEVST SETSKGSVLS LANGPADSDN AAHQANAYSG GTANGTFAEL LHCSNAADKP MQHQHHQQQP TLAYYAAPGS HVAPMSFEMI
201: PQLTFSQDQQ HRHHRHHASV AFERSTLQSN TVSTPQWPPS QHPFLMQRFS AAPAEPSPMF PFFLGGNSAA AAAPAAANAP ERRLQLWDFK EERKT
101: CSFGLPVASP AAEDTAEVST SETSKGSVLS LANGPADSDN AAHQANAYSG GTANGTFAEL LHCSNAADKP MQHQHHQQQP TLAYYAAPGS HVAPMSFEMI
201: PQLTFSQDQQ HRHHRHHASV AFERSTLQSN TVSTPQWPPS QHPFLMQRFS AAPAEPSPMF PFFLGGNSAA AAAPAAANAP ERRLQLWDFK EERKT
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.