Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P31520_001 | Banana | nucleus | 72.77 | 73.16 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 73.04 | 73.04 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 72.25 | 73.02 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 71.47 | 71.47 |
| OQU89064 | Sorghum | cytosol | 11.26 | 53.75 |
| Os03t0785800-01 | Rice | nucleus | 43.72 | 46.78 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 46.86 | 43.03 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 46.34 | 42.96 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 49.48 | 42.57 |
| Os07t0152000-01 | Rice | nucleus | 49.48 | 42.47 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 47.12 | 42.45 |
| Zm00001d007868_P001 | Maize | nucleus | 47.38 | 41.14 |
| Zm00001d018806_P001 | Maize | nucleus | 46.6 | 40.73 |
| PGSC0003DMT400051253 | Potato | nucleus | 36.13 | 40.35 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 40.05 | 40.16 |
| Zm00001d034353_P001 | Maize | cytosol | 40.05 | 39.64 |
| AT4G18390.1 | Thale cress | nucleus | 37.7 | 39.45 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 30.37 | 39.32 |
| KXG37409 | Sorghum | cytosol | 39.79 | 39.07 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 30.37 | 39.06 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 30.63 | 39.0 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 30.1 | 38.98 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 46.86 | 38.83 |
| AT1G30210.1 | Thale cress | nucleus | 32.72 | 38.58 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 40.31 | 38.5 |
| Solyc08g048390.1.1 | Tomato | nucleus | 38.22 | 37.73 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 39.27 | 37.41 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 39.27 | 37.04 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 38.74 | 36.63 |
| KRH42567 | Soybean | nucleus | 44.5 | 36.32 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 28.53 | 36.09 |
| KRH11155 | Soybean | nucleus | 48.17 | 36.01 |
| KRH58674 | Soybean | nucleus | 45.03 | 35.98 |
| Solyc08g048370.2.1 | Tomato | cytosol | 29.58 | 34.66 |
| KRH21093 | Soybean | nucleus | 48.17 | 34.59 |
| Zm00001d022256_P001 | Maize | nucleus | 28.8 | 34.06 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 46.07 | 32.12 |
| CDX78849 | Canola | nucleus, plastid | 18.59 | 29.71 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 18.59 | 29.71 |
| GSMUA_Achr10P... | Banana | nucleus | 18.59 | 28.51 |
| GSMUA_Achr6P14430_001 | Banana | nucleus | 17.54 | 27.92 |
| GSMUA_Achr8P19990_001 | Banana | nucleus | 17.54 | 27.8 |
| GSMUA_Achr3P31370_001 | Banana | nucleus | 18.85 | 27.59 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 14.14 | 25.96 |
| GSMUA_Achr10P... | Banana | nucleus | 15.97 | 23.02 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 19.63 | 21.87 |
| GSMUA_Achr7P13980_001 | Banana | nucleus | 20.68 | 21.47 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 16.49 | 21.07 |
| GSMUA_Achr3P03540_001 | Banana | nucleus | 20.42 | 19.4 |
| GSMUA_Achr5P06660_001 | Banana | mitochondrion, plastid | 21.99 | 17.83 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 9.69 | 14.18 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 12.04 | 13.94 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 10.21 | 12.04 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G02530_001 | EnsemblPlants:GSMUA_Achr5P02530_001 |
| EnsemblPlants:GSMUA_Achr5T02530_001 | InterPro:IPR017887 | UniProt:M0SV32 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000295E2A6 | SEG:seg | : |
Description
Putative Transcription factor PCF6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G02530_001]
Coordinates
chr5:+:1611723..1613069
Molecular Weight (calculated)
41441.1 Da
IEP (calculated)
7.990
GRAVY (calculated)
-0.711
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MELEENDHAS KRSRMMCNGS QAAKIGRKQL ARDDDEDGEK RKGEGGADAN RIGSWQHYPS SRIFRVSRAS GGKDRHSKVY TAKGLRDRRV RLSVSTAIQF
101: YDLQDRLGCD QPSKAIEWLI KAAAAAINEL PPLDGFLKPP HPSGEEIMEI NPDVECSYNQ QQQQQHQSSK SGCSSTSEIS KGSNPNPYPN PQTPSLTTTF
201: TELLTGGGSQ ISTADYFVQA GLFAQPQKSH QLPSSFPSQS HFGNRSPMGM LPFNIAATGH HPEMQQLFLQ DHVFPVSAVA ASGDYNLNFS ISSGIAGFSR
301: GTLQSNSPAQ MPQQHHHSHN NLPRLSSTVD GSNLQFFFGS AAGSAAAATS AENQFPAGMD GGLQLCYGDG YRHSDLKGKG KR
101: YDLQDRLGCD QPSKAIEWLI KAAAAAINEL PPLDGFLKPP HPSGEEIMEI NPDVECSYNQ QQQQQHQSSK SGCSSTSEIS KGSNPNPYPN PQTPSLTTTF
201: TELLTGGGSQ ISTADYFVQA GLFAQPQKSH QLPSSFPSQS HFGNRSPMGM LPFNIAATGH HPEMQQLFLQ DHVFPVSAVA ASGDYNLNFS ISSGIAGFSR
301: GTLQSNSPAQ MPQQHHHSHN NLPRLSSTVD GSNLQFFFGS AAGSAAAATS AENQFPAGMD GGLQLCYGDG YRHSDLKGKG KR
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.