Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G426200.1 | Wheat | nucleus | 94.02 | 93.32 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 92.77 | 91.85 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 85.54 | 85.75 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 47.13 | 45.43 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 38.65 | 41.01 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 38.4 | 40.31 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 38.15 | 40.26 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 38.15 | 40.05 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 37.41 | 39.27 |
| AT1G30210.1 | Thale cress | nucleus | 29.68 | 36.73 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 26.68 | 36.27 |
| AT4G18390.1 | Thale cress | nucleus | 31.92 | 35.07 |
| PGSC0003DMT400051253 | Potato | nucleus | 29.43 | 34.5 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 38.15 | 34.46 |
| KRH58674 | Soybean | nucleus | 37.16 | 31.17 |
| Solyc08g048390.1.1 | Tomato | nucleus | 29.68 | 30.75 |
| Solyc08g048370.2.1 | Tomato | cytosol | 24.69 | 30.37 |
| KRH42567 | Soybean | nucleus | 35.41 | 30.34 |
| KRH11155 | Soybean | nucleus | 37.16 | 29.16 |
| KRH21093 | Soybean | nucleus | 36.91 | 27.82 |
| TraesCS3D01G298900.1 | Wheat | nucleus | 17.96 | 26.18 |
| CDX78849 | Canola | nucleus, plastid | 15.46 | 25.94 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 15.46 | 25.94 |
| TraesCS1D01G335300.1 | Wheat | nucleus | 19.2 | 24.6 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 25.69 | 22.69 |
| TraesCS2D01G019300.1 | Wheat | extracellular | 12.72 | 21.61 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 11.72 | 17.8 |
| TraesCS5D01G213400.1 | Wheat | cytosol | 11.22 | 16.36 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 13.97 | 15.91 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G432500.1 | EnsemblPlantsGene:TraesCS5D01G432500 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF63 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5D:+:488677423..488678722
Molecular Weight (calculated)
41410.1 Da
IEP (calculated)
9.803
GRAVY (calculated)
-0.532
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MESADAAGGA AGDGAPPGRG SSAKRMRGVI GSGGGDGMEV VPWGSPPPPG QQPAQLQGSA SRICRVRASG GKDRHSKVYT SKGIRDRRVR LSVPTAIQFY
101: DLQDRLGFDQ PSKAVEWLIN AASAAIDELP SLDPAAFANM PADHQAAPRA GKQQQQPQGS RSLCSSTSET SKGSELSLSR SDGRVGGGSS RDKEVTVASN
201: PSAQAGSFTE LLTGAGAGAA SAGAAIASAA PRRQSWQQQP VSAVTADRVG IAHPGKGAGA QVVPTYPGFR FGNAPPFGMQ PAQPFNFGPS AQHQMTQFSL
301: VQGGLAAAPA PAQAGDYSLD FSMNSGYMGA SRGPLQSNSP HFSSHHQQQQ QQRQLQDLDD GPSPPFLYEN AAAAAPHLTA TAAMQLWNGF SHAGMKEKSK
401: N
101: DLQDRLGFDQ PSKAVEWLIN AASAAIDELP SLDPAAFANM PADHQAAPRA GKQQQQPQGS RSLCSSTSET SKGSELSLSR SDGRVGGGSS RDKEVTVASN
201: PSAQAGSFTE LLTGAGAGAA SAGAAIASAA PRRQSWQQQP VSAVTADRVG IAHPGKGAGA QVVPTYPGFR FGNAPPFGMQ PAQPFNFGPS AQHQMTQFSL
301: VQGGLAAAPA PAQAGDYSLD FSMNSGYMGA SRGPLQSNSP HFSSHHQQQQ QQRQLQDLDD GPSPPFLYEN AAAAAPHLTA TAAMQLWNGF SHAGMKEKSK
401: N
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.