Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30210.1 | KRH10202 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | KRH23133 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | KRG95533 | AT5G13060.1 | 18818695 |
| AT1G30210.1 | KRH67208 | AT5G13060.1 | 18818695 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH42567 | Soybean | nucleus | 83.26 | 85.04 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 54.6 | 58.78 |
| KRH11155 | Soybean | nucleus | 58.79 | 54.99 |
| KRH21093 | Soybean | nucleus | 60.04 | 53.95 |
| CDX99891 | Canola | nucleus | 35.15 | 53.0 |
| Bra032365.1-P | Field mustard | nucleus | 34.52 | 51.89 |
| CDY26285 | Canola | nucleus | 34.52 | 51.89 |
| CDY59229 | Canola | nucleus | 32.85 | 50.16 |
| Bra010789.1-P | Field mustard | nucleus | 32.22 | 50.0 |
| AT1G30210.1 | Thale cress | nucleus | 33.89 | 50.0 |
| CDX90234 | Canola | nucleus | 32.22 | 50.0 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 37.87 | 47.88 |
| PGSC0003DMT400051253 | Potato | nucleus | 34.1 | 47.66 |
| Solyc08g048390.1.1 | Tomato | nucleus | 38.28 | 47.29 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 36.82 | 46.07 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 36.19 | 45.53 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 35.98 | 45.03 |
| OQU89064 | Sorghum | cytosol | 7.53 | 45.0 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 38.49 | 44.23 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 38.08 | 44.17 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 34.94 | 43.72 |
| Solyc08g048370.2.1 | Tomato | cytosol | 29.71 | 43.56 |
| Os03t0785800-01 | Rice | nucleus | 32.43 | 43.42 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 37.87 | 42.69 |
| KXG37409 | Sorghum | cytosol | 33.89 | 41.65 |
| Os07t0152000-01 | Rice | nucleus | 38.49 | 41.35 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 32.85 | 41.21 |
| Zm00001d018806_P001 | Maize | nucleus | 36.82 | 40.27 |
| Zm00001d007868_P001 | Maize | nucleus | 36.61 | 39.77 |
| Zm00001d034353_P001 | Maize | cytosol | 31.59 | 39.12 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 37.45 | 38.83 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 31.8 | 38.0 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 23.43 | 37.33 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 23.01 | 37.29 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 31.59 | 37.28 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 31.17 | 37.16 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 31.38 | 37.13 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 23.01 | 37.04 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 22.8 | 36.95 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 23.22 | 36.76 |
| Zm00001d022256_P001 | Maize | nucleus | 23.85 | 35.29 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 38.49 | 33.58 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 12.34 | 28.37 |
| KRH27017 | Soybean | nucleus | 18.2 | 25.36 |
| KRH22307 | Soybean | nucleus | 18.2 | 25.29 |
| KRH26201 | Soybean | nucleus | 20.29 | 24.43 |
| KRH55125 | Soybean | nucleus | 19.87 | 24.3 |
| KRH25697 | Soybean | nucleus | 14.64 | 24.05 |
| KRH45058 | Soybean | nucleus | 17.78 | 23.94 |
| KRH27317 | Soybean | nucleus | 18.62 | 23.61 |
| KRG93654 | Soybean | nucleus | 18.41 | 23.53 |
| KRH21998 | Soybean | nucleus | 18.41 | 22.39 |
| KRH55819 | Soybean | nucleus | 15.48 | 22.22 |
| KRH01308 | Soybean | cytosol | 17.78 | 22.14 |
| KRH63215 | Soybean | nucleus, plastid | 17.78 | 21.96 |
| KRH54711 | Soybean | plastid | 17.78 | 21.79 |
| KRH03150 | Soybean | nucleus, plastid | 16.11 | 19.79 |
| KRH56798 | Soybean | nucleus | 16.11 | 19.69 |
| KRH63057 | Soybean | nucleus | 14.02 | 17.4 |
| KRH03810 | Soybean | nucleus | 13.39 | 16.84 |
| KRH01497 | Soybean | plastid | 12.97 | 16.76 |
| KRH56692 | Soybean | nucleus | 13.18 | 16.76 |
| KRH54810 | Soybean | nucleus | 13.81 | 16.67 |
| KRH45185 | Soybean | plastid | 12.55 | 16.22 |
| KRG93829 | Soybean | nucleus, plastid | 13.39 | 15.38 |
| KRH18263 | Soybean | plastid | 13.39 | 15.27 |
| KRH35497 | Soybean | nucleus | 11.51 | 14.47 |
| KRG91334 | Soybean | nucleus | 11.09 | 14.13 |
Protein Annotations
| EntrezGene:100816799 | MapMan:15.5.19 | EMBL:ACUP02003280 | InterPro:CYC/TB1_R_domain | ncoils:Coil | EnsemblPlantsGene:GLYMA_05G142000 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | InterPro:IPR017888 | UniProt:K7KQ72 |
| ProteinID:KRH58673.1 | EnsemblPlants:KRH58674 | ProteinID:KRH58674 | ProteinID:KRH58674.1 | ProteinID:KRH58675.1 | ProteinID:KRH58676.1 |
| ProteinID:KRH58677.1 | ProteinID:KRH58678.1 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002339C79 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr5:-:33530449..33539474
Molecular Weight (calculated)
52805.2 Da
IEP (calculated)
7.848
GRAVY (calculated)
-0.996
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEDEIQAQ KVRRRRGSDG ESTNRFHSSW HHHHHHSSRI IRVSRASGGK DRHSKVMTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKSA
101: SDSISELPSL NNFPDTPKSD DHEKRANTDV AAGAVDGENY ENENGNNNNQ SQNMSLSKSG CSSTSETSKG SGLSLSRSDI RVKARERARE RTTKEKEKEK
201: NESHHHHSNV VVPHHRHHHH HNPVSQTASF TELLTGGIPK GCDDEEPNNM MMFNKEAAAA SSGRQQWCSS SSAAAAAPMD YFLGPSSSRT TTTPPHNHHH
301: HHHQYSSSGG FSLAQIQLGH SLPEAMNHNV SAFNNNVSGE NQNHSSSDPH LQQQQHFSFI PDHLMSAVVT SSSHHQPSGS DYNLNFTMSS GLAGYNRGTL
401: QSNSPSLLPH LQRFSPLDGS TVPFFIGAAP SAAVAAPAME NNTTTTNNHH HHQFSSGFDG SRLQLYYGHS DQKGKAKN
101: SDSISELPSL NNFPDTPKSD DHEKRANTDV AAGAVDGENY ENENGNNNNQ SQNMSLSKSG CSSTSETSKG SGLSLSRSDI RVKARERARE RTTKEKEKEK
201: NESHHHHSNV VVPHHRHHHH HNPVSQTASF TELLTGGIPK GCDDEEPNNM MMFNKEAAAA SSGRQQWCSS SSAAAAAPMD YFLGPSSSRT TTTPPHNHHH
301: HHHQYSSSGG FSLAQIQLGH SLPEAMNHNV SAFNNNVSGE NQNHSSSDPH LQQQQHFSFI PDHLMSAVVT SSSHHQPSGS DYNLNFTMSS GLAGYNRGTL
401: QSNSPSLLPH LQRFSPLDGS TVPFFIGAAP SAAVAAPAME NNTTTTNNHH HHQFSSGFDG SRLQLYYGHS DQKGKAKN
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.