Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30210.1 | OQU75979 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | EES19490 | AT5G13060.1 | 18818695 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 87.66 | 89.5 |
| Zm00001d034353_P001 | Maize | cytosol | 87.15 | 87.82 |
| OQU89064 | Sorghum | cytosol | 10.28 | 50.0 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 50.39 | 46.23 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 49.36 | 46.15 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 48.59 | 45.87 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 41.9 | 42.67 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 41.39 | 42.15 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 49.87 | 42.08 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 40.62 | 41.8 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 40.1 | 41.05 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 39.07 | 39.79 |
| AT1G30210.1 | Thale cress | nucleus | 32.9 | 39.51 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 28.79 | 37.09 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 41.9 | 36.71 |
| AT4G18390.1 | Thale cress | nucleus | 33.16 | 35.34 |
| PGSC0003DMT400051253 | Potato | nucleus | 30.85 | 35.09 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 48.84 | 34.67 |
| KRH58674 | Soybean | nucleus | 41.65 | 33.89 |
| KRH42567 | Soybean | nucleus | 39.85 | 33.12 |
| Solyc08g048390.1.1 | Tomato | nucleus | 31.36 | 31.52 |
| KRH11155 | Soybean | nucleus | 40.62 | 30.92 |
| KRH21093 | Soybean | nucleus | 40.87 | 29.89 |
| Solyc08g048370.2.1 | Tomato | cytosol | 24.68 | 29.45 |
| CDX78849 | Canola | nucleus, plastid | 17.48 | 28.45 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 17.48 | 28.45 |
| EES18493 | Sorghum | cytosol | 19.54 | 25.5 |
| EES03657 | Sorghum | nucleus | 18.77 | 25.26 |
| EER96723 | Sorghum | nucleus | 13.37 | 19.4 |
| KXG33398 | Sorghum | nucleus | 21.85 | 18.85 |
| EES13882 | Sorghum | cytosol | 11.83 | 17.9 |
| OQU86111 | Sorghum | plastid | 23.39 | 14.51 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 13.11 | 13.42 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:8083919 | UniProt:C5WY77 | ProteinID:EER93342.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | EnsemblPlants:KXG37409 | ProteinID:KXG37409 | ProteinID:KXG37409.2 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF63 | EnsemblPlantsGene:SORBI_3001G066100 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI0001A82BD4 | RefSeq:XP_002466344.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:5025538..5030409
Molecular Weight (calculated)
39859.1 Da
IEP (calculated)
9.600
GRAVY (calculated)
-0.447
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASAVGDGA AGEGAAPAGR SQQGAKRGRG GAVRGSEADA AWGQPPMLPP PQAPGAGSRI YRVRASGGKD RHSKVYTAKG IRDRRVRLSV PTAIQFYDLQ
101: DRLGFDQPSK AIEWLINAAS SAIEKLPELD PAAFAALPAP GDADAGGKDK QQQGSKSAGS STSETSKGSE LSLSRSDGRG AGAAARDREV TVASTSAQAA
201: SFTELLTGVA SAGSITAAEH KQSWHQQPNV SAAAAADCVG IANHGKGAHG LSTHTFSAPA AAKYGNAPPF GLVPAQPFNF TSPIEMPHFS LGQDTLAASS
301: PAAGDYSLNF SMSSGFLGAN RGTLQSNSQS NFSGHNHQHL QRLDGPILFG HAHAAAAAHP ASENQLTASA ALQLWDGLRH SGMKEKSKN
101: DRLGFDQPSK AIEWLINAAS SAIEKLPELD PAAFAALPAP GDADAGGKDK QQQGSKSAGS STSETSKGSE LSLSRSDGRG AGAAARDREV TVASTSAQAA
201: SFTELLTGVA SAGSITAAEH KQSWHQQPNV SAAAAADCVG IANHGKGAHG LSTHTFSAPA AAKYGNAPPF GLVPAQPFNF TSPIEMPHFS LGQDTLAASS
301: PAAGDYSLNF SMSSGFLGAN RGTLQSNSQS NFSGHNHQHL QRLDGPILFG HAHAAAAAHP ASENQLTASA ALQLWDGLRH SGMKEKSKN
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.