CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032217_P001	Maize	cytosol	78.6	84.17
TraesCS2B01G025700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	44.36	55.88
TraesCS2A01G018000.1	Wheat	cytosol	43.97	55.39
TraesCS2D01G019300.1	Wheat	extracellular	45.53	49.58
Os08t0432300-00	Rice	nucleus	50.58	43.92
EER96723	Sorghum	nucleus	42.02	40.3
OQU89064	Sorghum	cytosol	7.39	23.75
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	32.68	22.11
EES18493	Sorghum	cytosol	18.29	15.77
EES03657	Sorghum	nucleus	17.12	15.22
EES16387	Sorghum	cytosol, nucleus, plastid	17.51	14.9
KXG37409	Sorghum	cytosol	17.9	11.83
EER95875	Sorghum	cytosol, nucleus, peroxisome	17.9	9.98
KXG33398	Sorghum	nucleus	17.51	9.98
OQU86111	Sorghum	plastid	19.07	7.81

Protein Annotations

MapMan:15.5.19	EntrezGene:8075661	UniProt:C5YL71	EnsemblPlants:EES13882	ProteinID:EES13882	ProteinID:EES13882.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF68	EnsemblPlantsGene:SORBI_3007G135700	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A878E3
RefSeq:XP_002444387.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:56156125..56157410

Molecular Weight (calculated)

27476.6 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.437

Length

257 amino acids

Sequence
(BLAST)

001: MPSTAMSWDG YGGQIFPADM SSFHHQDTLE AVFRQPETTA PLQAPAAAGE MELLLRNGSP VPVVDAGVHA AAAPRKRPFR TDRHSKIRTA QGVRDRRMRL
101: SVGVAREFFA LQDRLGFDKA SKTVNWLLTQ SKPAIDRLVD AAEPAVALVS GGPPTVVKGR GEGNSSSTCC LTVDSREEAT EKARSRGGGG GGTGGPDGPP
201: ALMEEHGRGE LGWIMTEATA AAAAATAQPQ QMDGLEYYYQ YCLQLEEMMR CNGGMPR

Best Arabidopsis Sequence Match ( AT3G18550.4 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.