CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020433_P001	Maize	nucleus	80.97	85.77
Zm00001d005737_P001	Maize	cytosol	87.31	84.78
Os09t0410500-00	Rice	nucleus	61.94	61.48
HORVU5Hr1G061270.1	Barley	nucleus	61.57	60.44
TraesCS5A01G207300.1	Wheat	cytosol	60.07	59.19
TraesCS5B01G205600.1	Wheat	cytosol	60.45	59.12
TraesCS5D01G213400.1	Wheat	cytosol	59.7	58.18
EES13882	Sorghum	cytosol	40.3	42.02
OQU89064	Sorghum	cytosol	7.84	26.25
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	32.84	23.16
EES03657	Sorghum	nucleus	15.67	14.53
KXG37409	Sorghum	cytosol	19.4	13.37
EES18493	Sorghum	cytosol	14.55	13.09
EES16387	Sorghum	cytosol, nucleus, plastid	14.55	12.91
KXG33398	Sorghum	nucleus	17.54	10.42
EER95875	Sorghum	cytosol, nucleus, peroxisome	17.91	10.41
OQU86111	Sorghum	plastid	19.4	8.29

Protein Annotations

MapMan:15.5.19	EntrezGene:8055812	UniProt:C5XC81	EnsemblPlants:EER96723	ProteinID:EER96723	ProteinID:EER96723.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF65	EnsemblPlantsGene:SORBI_3002G198400	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A83B1E
RefSeq:XP_002460202.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:58831530..58832939

Molecular Weight (calculated)

28935.5 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.742

Length

268 amino acids

Sequence
(BLAST)

001: MLPYPNPHHF GVSQEPPHPN PTSFPMLPPG AHLDQQHYVD HHFFPGHGHF NSETLEAVLR PTRAAPECEA AVAAAAQQGG RRNGVPAGGG QGQGHARARK
101: RPFRTDRHSK IRTAQGVRDR RMRLSLDVAR DFFALQDRLG FDKASKTVDW LLTQSKPAIE RLAATDLSQR SVGGGSDDAA LSPPTSGAAA DGPGKRGGVA
201: EKLSSRSGGS ASMEMEHTCD LDRLVSAAPV LREYYYGLSE MMSNDNGGDG DDDGEYEEDG DFLDGMQY

Best Arabidopsis Sequence Match ( AT3G18550.4 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.