Factsheet for Zm00001d020433_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96723	Sorghum	nucleus	85.77	80.97
Zm00001d005737_P001	Maize	cytosol	83.79	76.81
Os09t0410500-00	Rice	nucleus	58.1	54.44
HORVU5Hr1G061270.1	Barley	nucleus	57.31	53.11
TraesCS5A01G207300.1	Wheat	cytosol	55.73	51.84
TraesCS5B01G205600.1	Wheat	cytosol	56.13	51.82
TraesCS5D01G213400.1	Wheat	cytosol	55.34	50.91
Zm00001d032217_P001	Maize	cytosol	38.74	40.83
Zm00001d050389_P001	Maize	nucleus	43.48	40.15
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	31.23	21.58
Zm00001d013467_P001	Maize	nucleus	28.46	20.06
Zm00001d010730_P001	Maize	cytosol, plastid	15.02	13.82
Zm00001d043368_P001	Maize	cytosol	15.41	13.78
Zm00001d034353_P001	Maize	cytosol	19.37	12.69
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	18.97	12.6
Zm00001d038683_P001	Maize	cytosol	14.62	12.42
Zm00001d022256_P001	Maize	nucleus	15.02	11.76
Zm00001d043423_P001	Maize	nucleus	18.97	11.06
Zm00001d007868_P001	Maize	nucleus	18.18	10.45
Zm00001d008919_P001	Maize	nucleus, plastid	17.39	10.35
Zm00001d018806_P001	Maize	nucleus	17.79	10.3
Zm00001d039371_P001	Maize	mitochondrion	18.97	8.5
Zm00001d012725_P002	Maize	plastid	18.18	6.59

Protein Annotations

MapMan:15.5.19	UniProt:A0A1D6I460	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
ProteinID:ONM54927.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF65	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI00084575FC	EnsemblPlantsGene:Zm00001d020433	EnsemblPlants:Zm00001d020433_P001	EnsemblPlants:Zm00001d020433_T001	SEG:seg

Description

TCP-transcription factor 18Transcription factor TCP18

Coordinates

chr7:+:114008489..114009250

Molecular Weight (calculated)

27217.6 Da

IEP (calculated)

6.351

GRAVY (calculated)

-0.727

Length

253 amino acids

Sequence
(BLAST)

001: MLPRGAHLDQ RYVDHHFFPG HGHTNSETLE AVLRPTRAAP ECEAAVVTAP PQGGSGRRNG AVPAAGGQGQ GHAHAHARAP RKRPFRTDRH SKIRTAQGVR
101: DRRMRLSLDV ARDFFALQDR LGFDKASKTV DWLLTQSKPA IERLAATTEP SQRSVGGSDD AALSPPTSGV ADGSGMRGGV AEKLGSRSGG SAASMEMEME
201: HASELDRLVS AAPVLRQYYY GLSEMMSNDN GGDGDDDGEY EEEDGDFLDG MKY

Best Arabidopsis Sequence Match ( AT3G18550.4 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.