Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 81.89 | 80.33 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 84.68 | 80.0 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 55.43 | 56.21 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 54.87 | 55.97 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 54.6 | 55.68 |
| Os03t0706500-01 | Rice | nucleus | 59.05 | 54.64 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 53.48 | 53.78 |
| Zm00001d020433_P001 | Maize | nucleus | 20.06 | 28.46 |
| Zm00001d032217_P001 | Maize | cytosol | 18.11 | 27.08 |
| Zm00001d005737_P001 | Maize | cytosol | 20.33 | 26.45 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 18.66 | 25.67 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 16.43 | 24.79 |
| PGSC0003DMT400010380 | Potato | nucleus | 18.94 | 24.37 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 16.16 | 24.07 |
| Zm00001d050389_P001 | Maize | nucleus | 17.55 | 22.99 |
| PGSC0003DMT400008673 | Potato | nucleus | 9.75 | 22.29 |
| CDX95517 | Canola | nucleus | 17.27 | 21.91 |
| CDY18525 | Canola | nucleus | 17.27 | 21.91 |
| Bra037579.1-P | Field mustard | nucleus | 17.27 | 21.75 |
| Solyc03g045030.1.1 | Tomato | nucleus | 10.86 | 21.31 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 19.22 | 21.3 |
| CDY33597 | Canola | nucleus | 18.94 | 21.05 |
| CDY45852 | Canola | nucleus | 18.94 | 20.48 |
| KRH56692 | Soybean | nucleus | 21.45 | 20.48 |
| Bra038350.1-P | Field mustard | nucleus | 18.94 | 20.3 |
| KRH03810 | Soybean | nucleus | 21.45 | 20.26 |
| CDX81550 | Canola | nucleus | 18.94 | 20.12 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 18.11 | 19.7 |
| AT1G68800.2 | Thale cress | nucleus | 18.38 | 18.23 |
| Solyc06g069240.1.1 | Tomato | nucleus | 20.61 | 18.23 |
| AT1G67260.1 | Thale cress | nucleus | 18.11 | 18.11 |
| KRH63057 | Soybean | nucleus | 19.22 | 17.92 |
| Solyc03g119770.2.1 | Tomato | nucleus | 17.27 | 17.92 |
| CDY01793 | Canola | nucleus | 17.55 | 17.85 |
| KRH01497 | Soybean | plastid | 18.38 | 17.84 |
| KRH45185 | Soybean | plastid | 18.38 | 17.84 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 18.11 | 17.76 |
| PGSC0003DMT400014572 | Potato | nucleus | 18.66 | 17.72 |
| CDX96104 | Canola | nucleus | 17.27 | 17.66 |
| Solyc04g006980.1.1 | Tomato | nucleus | 18.38 | 17.6 |
| PGSC0003DMT400019324 | Potato | nucleus | 18.66 | 17.59 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 21.45 | 17.58 |
| CDY12633 | Canola | nucleus | 15.6 | 17.39 |
| Bra004212.1-P | Field mustard | nucleus | 16.43 | 17.3 |
| KRH54810 | Soybean | nucleus | 18.66 | 16.92 |
| KRG93829 | Soybean | nucleus, plastid | 19.5 | 16.83 |
| CDY62798 | Canola | nucleus | 19.22 | 16.79 |
| CDY46042 | Canola | nucleus | 16.16 | 16.76 |
| Bra034010.1-P | Field mustard | nucleus | 16.16 | 16.76 |
| CDX82339 | Canola | nucleus | 19.78 | 16.75 |
| Bra001710.1-P | Field mustard | nucleus | 19.78 | 16.71 |
| AT3G18550.3 | Thale cress | nucleus | 20.06 | 16.59 |
| CDY07432 | Canola | nucleus | 16.16 | 16.48 |
| CDY52898 | Canola | nucleus | 19.5 | 16.47 |
| KRH35497 | Soybean | nucleus | 17.27 | 16.32 |
| KRH18263 | Soybean | plastid | 18.94 | 16.23 |
| CDY28898 | Canola | nucleus | 15.88 | 16.1 |
| KRG91334 | Soybean | nucleus | 16.71 | 16.0 |
| Bra004097.1-P | Field mustard | nucleus | 15.32 | 15.85 |
| Solyc05g009900.1.1 | Tomato | nucleus | 15.04 | 15.3 |
| PGSC0003DMT400002153 | Potato | nucleus | 14.48 | 14.69 |
| Zm00001d022256_P001 | Maize | nucleus | 12.26 | 13.62 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 13.37 | 12.6 |
| Zm00001d043423_P001 | Maize | nucleus | 13.93 | 11.52 |
| Zm00001d034353_P001 | Maize | cytosol | 12.26 | 11.4 |
| Zm00001d043368_P001 | Maize | cytosol | 8.91 | 11.31 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 13.37 | 11.29 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 8.64 | 11.27 |
| Zm00001d007868_P001 | Maize | nucleus | 13.65 | 11.14 |
| Zm00001d018806_P001 | Maize | nucleus | 13.09 | 10.76 |
| Zm00001d038683_P001 | Maize | cytosol | 8.36 | 10.07 |
| Zm00001d039371_P001 | Maize | mitochondrion | 14.21 | 9.03 |
| Zm00001d012725_P002 | Maize | plastid | 13.65 | 7.02 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A1D6GJP6 | ProteinID:AQK63585.1 | InterPro:CYC/TB1_R_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | InterPro:IPR017888 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0001E23F0E | EnsemblPlantsGene:Zm00001d013467 |
| EnsemblPlants:Zm00001d013467_P001 | EnsemblPlants:Zm00001d013467_T001 | SEG:seg | : | : | : |
Description
TCP-transcription factor 6Putative teosinte branched2
Coordinates
chr5:-:12293289..12294368
Molecular Weight (calculated)
38896.3 Da
IEP (calculated)
7.178
GRAVY (calculated)
-0.635
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPLYQQLQ LSPPSPKPDQ SSSFYCYPCS PPFAAADASF HLSYHIGSSA TDTHPQTVVN SPEIPVFPLM EQTPAPATEQ GAGACGAQGA GVSLDRAYAA
101: PRKDWHSKIC TAGAMRDRRM RLSLDVARKF FELQDMLGFD KASKTVQWLI NTSKAAIQEI MADDASSECV EDGSSSLSVD GKYNPAELGG GNEKSNGNAC
201: SEWKKPAMVR KAATTTKPPR KSGNNAHPVP DKETRAKARE RARERTKEKH RMRWVKLASA IDVEVAAASV ASDRPSSNNL SHHSLSSMNI PRAAAAELEE
301: RERSLLAPNN RGRMQEITGA SDVVGFGNGG GYGCDDGNYY CQEQWELGGV VFQQNSGFY
101: PRKDWHSKIC TAGAMRDRRM RLSLDVARKF FELQDMLGFD KASKTVQWLI NTSKAAIQEI MADDASSECV EDGSSSLSVD GKYNPAELGG GNEKSNGNAC
201: SEWKKPAMVR KAATTTKPPR KSGNNAHPVP DKETRAKARE RARERTKEKH RMRWVKLASA IDVEVAAASV ASDRPSSNNL SHHSLSSMNI PRAAAAELEE
301: RERSLLAPNN RGRMQEITGA SDVVGFGNGG GYGCDDGNYY CQEQWELGGV VFQQNSGFY
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGMSTPREH NTTSIATVDE EKSPISSFSL YDYLCY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGMSTPREH NTTSIATVDE EKSPISSFSL YDYLCY
Arabidopsis Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.