Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010341_P002 | |
| Zm00001d037086_P006 | |
| Zm00001d038134_P001 | |
| Zm00001d045080_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007868_P001 | Maize | nucleus | 88.1 | 87.5 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 89.24 | 84.6 |
| Os03t0785800-01 | Rice | nucleus | 42.33 | 51.82 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 44.62 | 51.18 |
| Zm00001d034353_P001 | Maize | cytosol | 43.94 | 49.74 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 42.33 | 48.43 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 40.96 | 47.35 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 41.19 | 47.12 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 40.73 | 46.6 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 40.5 | 46.58 |
| AT1G30210.1 | Thale cress | nucleus | 32.04 | 43.21 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 42.79 | 42.12 |
| AT4G18390.1 | Thale cress | nucleus | 33.87 | 40.55 |
| PGSC0003DMT400051253 | Potato | nucleus | 31.58 | 40.35 |
| Zm00001d022256_P001 | Maize | nucleus | 27.69 | 37.46 |
| Solyc08g048390.1.1 | Tomato | nucleus | 32.72 | 36.95 |
| KRH58674 | Soybean | nucleus | 40.27 | 36.82 |
| KRH42567 | Soybean | nucleus | 38.44 | 35.9 |
| KRH11155 | Soybean | nucleus | 41.65 | 35.62 |
| Solyc08g048370.2.1 | Tomato | cytosol | 26.54 | 35.58 |
| KRH21093 | Soybean | nucleus | 41.65 | 34.21 |
| CDX78849 | Canola | nucleus, plastid | 18.54 | 33.89 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 18.54 | 33.89 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 18.08 | 28.73 |
| Zm00001d038683_P001 | Maize | cytosol | 18.54 | 27.18 |
| Zm00001d043368_P001 | Maize | cytosol | 16.25 | 25.09 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 20.37 | 20.94 |
| Zm00001d032217_P001 | Maize | cytosol | 10.53 | 19.17 |
| Zm00001d020433_P001 | Maize | nucleus | 10.3 | 17.79 |
| Zm00001d005737_P001 | Maize | cytosol | 10.98 | 17.39 |
| Zm00001d039371_P001 | Maize | mitochondrion | 21.97 | 16.99 |
| Zm00001d050389_P001 | Maize | nucleus | 10.53 | 16.79 |
| Zm00001d043423_P001 | Maize | nucleus | 15.79 | 15.9 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 12.13 | 14.48 |
| Zm00001d013467_P001 | Maize | nucleus | 10.76 | 13.09 |
| Zm00001d012725_P002 | Maize | plastid | 15.79 | 9.89 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A1D6HSI6 | InterPro:CYC/TB1_R_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017887 | InterPro:IPR017888 | ProteinID:ONM51376.1 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00084529EA | EnsemblPlantsGene:Zm00001d018806 |
| EnsemblPlants:Zm00001d018806_P001 | EnsemblPlants:Zm00001d018806_T001 | SEG:seg | : | : | : |
Description
Transcription factor TCP2
Coordinates
chr7:+:5742596..5743909
Molecular Weight (calculated)
46207.9 Da
IEP (calculated)
10.049
GRAVY (calculated)
-0.515
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEAVGCVG AGGKRARAKG AGAEPEPKRR AVAMAVPPPA AAPWAQQHPA SRIYRVSRGS GGKDRHSKVY TAKGIRDRRV RLSVATAIQF YDLQDRLGYD
101: QPSKAIEWLI RAAADAIDKL PSLDTAAGFP AHPASAKDHA PPAGDNDDHH HQQQLTRSGC SSTSETSKGS VLSLSRSESR VKARDRARER SAVARDKDKD
201: PAADSRRAAA TSSAQAASFT ELLTGMAAAS SAAPAEHKHH QQSLVSWQPP SVSATTDYIG FAQPRKGGGH AMAHTFASPA PHLGNIASIA MAPAQHYHHL
301: ASGAVTVASG GGEPHADMTH FSFLQDHFMP VHAMPASAPA GEYNLNFSMS SGLLGVNSRG TLQSNSQPHI SGHHHHHHQQ LQRLSTPLDA PNIPFMFSSA
401: AAAAAAATTP TTAEGQFAAF QLWNGFQHAD MKEKGKN
101: QPSKAIEWLI RAAADAIDKL PSLDTAAGFP AHPASAKDHA PPAGDNDDHH HQQQLTRSGC SSTSETSKGS VLSLSRSESR VKARDRARER SAVARDKDKD
201: PAADSRRAAA TSSAQAASFT ELLTGMAAAS SAAPAEHKHH QQSLVSWQPP SVSATTDYIG FAQPRKGGGH AMAHTFASPA PHLGNIASIA MAPAQHYHHL
301: ASGAVTVASG GGEPHADMTH FSFLQDHFMP VHAMPASAPA GEYNLNFSMS SGLLGVNSRG TLQSNSQPHI SGHHHHHHQQ LQRLSTPLDA PNIPFMFSSA
401: AAAAAAATTP TTAEGQFAAF QLWNGFQHAD MKEKGKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.