Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0398100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30210.1 | Os05t0398100-01 | AT5G13060.1 | 18818695 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU89064 | Sorghum | cytosol | 11.48 | 51.25 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 47.9 | 45.24 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 46.78 | 43.72 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 46.5 | 43.46 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 50.14 | 43.45 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 50.14 | 43.03 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 45.66 | 42.89 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 50.42 | 42.45 |
| Zm00001d018806_P001 | Maize | nucleus | 51.82 | 42.33 |
| Os07t0152000-01 | Rice | nucleus | 52.1 | 41.8 |
| Zm00001d007868_P001 | Maize | nucleus | 50.42 | 40.91 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 43.7 | 40.84 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 51.54 | 39.91 |
| AT1G30210.1 | Thale cress | nucleus | 32.49 | 35.8 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 42.58 | 34.23 |
| PGSC0003DMT400051253 | Potato | nucleus | 31.93 | 33.33 |
| AT4G18390.1 | Thale cress | nucleus | 33.61 | 32.88 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 50.42 | 32.85 |
| KRH58674 | Soybean | nucleus | 43.42 | 32.43 |
| KRH42567 | Soybean | nucleus | 42.02 | 32.05 |
| Solyc08g048390.1.1 | Tomato | nucleus | 32.77 | 30.23 |
| KRH11155 | Soybean | nucleus | 42.3 | 29.55 |
| KRH21093 | Soybean | nucleus | 42.3 | 28.38 |
| Solyc08g048370.2.1 | Tomato | cytosol | 24.93 | 27.3 |
| Os05t0513100-01 | Rice | nucleus | 20.45 | 24.83 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 16.53 | 24.69 |
| CDX78849 | Canola | nucleus, plastid | 16.53 | 24.69 |
| Os01t0763200-01 | Rice | cytosol | 20.73 | 24.1 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 12.89 | 22.12 |
| Os09t0410500-00 | Rice | nucleus | 13.17 | 17.41 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 21.57 | 17.26 |
| Os01t0213800-01 | Rice | mitochondrion | 27.45 | 16.93 |
| Os08t0432300-00 | Rice | nucleus | 12.04 | 14.53 |
| Os03t0706500-01 | Rice | nucleus | 13.17 | 12.11 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:4334346 | EMBL:AB071806 | ProteinID:ABF99227.1 | EMBL:AK242788 | ProteinID:BAF13398.1 |
| ProteinID:BAS86727.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 |
| EnsemblPlantsGene:Os03g0785800 | EnsemblPlants:Os03t0785800-01 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF63 |
| UniProt:Q10CE8 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0000DB4768 | RefSeq:XP_015629084.1 | SEG:seg |
Description
PROLIFERATING CELL FACTOR 6Transcription factor , Cold tolerance (Os03t0785800-01)
Coordinates
chr3:+:32614060..32618299
Molecular Weight (calculated)
36358.1 Da
IEP (calculated)
8.689
GRAVY (calculated)
-0.384
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI
101: NAASPAIDTL PSLDPAAFAA IPHAAADAAP TRRRSQQQQQ QLSNKSGCSS TSETSKGSDK EVTVASAPAQ AASFTELLIA GVAASSAGGG AIGNGADCVG
201: IAHPGKGGAE GASTYGFSAA SSFGDAPPIG MVPAPPFNFS APGADMAAHY SLAQDQLAAP PPPAGGDYNL NFSMSSGFLG ANRGTLQSNS PSNMSGHHHH
301: HHQQQLQRLD GSTISFLLGH AAAAAHPAAS EGQITSTAAL QLWDGFRHSG MKEKSKN
101: NAASPAIDTL PSLDPAAFAA IPHAAADAAP TRRRSQQQQQ QLSNKSGCSS TSETSKGSDK EVTVASAPAQ AASFTELLIA GVAASSAGGG AIGNGADCVG
201: IAHPGKGGAE GASTYGFSAA SSFGDAPPIG MVPAPPFNFS APGADMAAHY SLAQDQLAAP PPPAGGDYNL NFSMSSGFLG ANRGTLQSNS PSNMSGHHHH
301: HHQQQLQRLD GSTISFLLGH AAAAAHPAAS EGQITSTAAL QLWDGFRHSG MKEKSKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.