CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19490
OQU75979

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	OQU75979	AT4G14700.1	18818695
AT1G30210.1	EES19490	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95875	Sorghum	cytosol, nucleus, peroxisome	90.0	15.62
Zm00001d007868_P001	Maize	nucleus	78.75	14.32
GSMUA_Achr7P01160_001	Banana	nucleus	60.0	12.57
GSMUA_Achr2P12990_001	Banana	nucleus	58.75	12.43
GSMUA_Achr4P22960_001	Banana	nucleus	57.5	12.04
AT1G30210.1	Thale cress	nucleus	47.5	11.73
GSMUA_Achr4P31520_001	Banana	nucleus	55.0	11.58
Os03t0785800-01	Rice	nucleus	51.25	11.48
EES03657	Sorghum	nucleus	41.25	11.42
EES18493	Sorghum	cytosol	42.5	11.41
GSMUA_Achr5P02530_001	Banana	nucleus	53.75	11.26
Solyc08g048370.2.1	Tomato	cytosol	42.5	10.43
KXG37409	Sorghum	cytosol	50.0	10.28
PGSC0003DMT400051253	Potato	nucleus	42.5	9.94
EES16387	Sorghum	cytosol, nucleus, plastid	37.5	9.93
VIT_10s0003g03910.t01	Wine grape	nucleus	52.5	9.46
AT4G18390.1	Thale cress	nucleus	42.5	9.32
Solyc08g048390.1.1	Tomato	nucleus	43.75	9.04
EER96723	Sorghum	nucleus	26.25	7.84
KRH11155	Soybean	nucleus	50.0	7.83
KRH42567	Soybean	nucleus	45.0	7.69
KRH58674	Soybean	nucleus	45.0	7.53
KRH21093	Soybean	nucleus	50.0	7.52
EES13882	Sorghum	cytosol	23.75	7.39
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	30.0	6.32
KXG33398	Sorghum	nucleus	28.75	5.1
OQU86111	Sorghum	plastid	33.75	4.31
Bra013304.1-P	Field mustard	nucleus, plastid	0.0	0.0
CDX78849	Canola	nucleus, plastid	0.0	0.0

Protein Annotations

MapMan:35.2	UniProt:A0A1W0W3T1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
EnsemblPlants:OQU89064	ProteinID:OQU89064	ProteinID:OQU89064.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF13	EnsemblPlantsGene:SORBI_3002G141450	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0009DC84C3	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:22969466..22971832

Molecular Weight (calculated)

8194.7 Da

IEP (calculated)

10.557

GRAVY (calculated)

-0.221

Length

80 amino acids

Sequence
(BLAST)

1: MEVEEEAVGC ASATGGGAGG KRAVAVTVSP AAGAPWAQQH PASRIYRVSR ASGGKDRHSK VYTAKGIRDR RVCLSVATAI

Best Arabidopsis Sequence Match ( AT1G30210.1 )
(BLAST)

001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR

Arabidopsis Description

TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.