CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19490
OQU75979

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	OQU75979	AT4G14700.1	18818695
AT1G30210.1	EES19490	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022256_P001	Maize	nucleus	87.42	81.73
TraesCS5D01G040100.1	Wheat	nucleus	62.91	64.41
TraesCS5A01G031900.1	Wheat	nucleus	62.58	63.64
HORVU5Hr1G008340.2	Barley	nucleus	61.92	63.39
TraesCS5B01G032000.1	Wheat	nucleus	62.25	62.67
OQU89064	Sorghum	cytosol	9.93	37.5
GSMUA_Achr2P12990_001	Banana	nucleus	38.08	30.42
GSMUA_Achr7P01160_001	Banana	nucleus	37.09	29.32
GSMUA_Achr4P31520_001	Banana	nucleus	36.42	28.95
KXG37409	Sorghum	cytosol	37.09	28.79
GSMUA_Achr5P02530_001	Banana	nucleus	36.09	28.53
GSMUA_Achr4P22960_001	Banana	nucleus	36.09	28.53
AT1G30210.1	Thale cress	nucleus	30.46	28.4
VIT_10s0003g03910.t01	Wine grape	nucleus	38.74	26.35
PGSC0003DMT400051253	Potato	nucleus	29.47	26.02
EER95875	Sorghum	cytosol, nucleus, peroxisome	39.07	25.6
Solyc08g048390.1.1	Tomato	nucleus	32.78	25.58
AT4G18390.1	Thale cress	nucleus	30.13	24.93
KRH42567	Soybean	nucleus	37.42	24.15
Solyc08g048370.2.1	Tomato	cytosol	25.5	23.62
KRH58674	Soybean	nucleus	36.76	23.22
KRH11155	Soybean	nucleus	39.07	23.09
KRH21093	Soybean	nucleus	39.07	22.18
EES18493	Sorghum	cytosol	19.87	20.13
EES03657	Sorghum	nucleus	18.54	19.38
EES13882	Sorghum	cytosol	14.9	17.51
CDX78849	Canola	nucleus, plastid	13.58	17.15
Bra013304.1-P	Field mustard	nucleus, plastid	13.58	17.15
KXG33398	Sorghum	nucleus	23.51	15.74
EER96723	Sorghum	nucleus	12.91	14.55
OQU86111	Sorghum	plastid	26.82	12.92
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	14.24	11.32

Protein Annotations

MapMan:15.5.19	EntrezGene:8084416	UniProt:C5YS27	EnsemblPlants:EES16387	ProteinID:EES16387	ProteinID:EES16387.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF23	EnsemblPlantsGene:SORBI_3008G172200	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A88184
RefSeq:XP_002442549.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:60570349..60574217

Molecular Weight (calculated)

31238.4 Da

IEP (calculated)

7.099

GRAVY (calculated)

-0.188

Length

302 amino acids

Sequence
(BLAST)

001: MEEVAVAAGM ERAAGCKRPR GALDGGGSAS AAAWRTCRVA RAAAGGKDRH SKVVTARGLR DRRVRLSVPT AIQFYDIQDR LGVDQPSKAI EWLIRAAAAA
101: IDGLPSLDCS FALPTAAGAA SPPGAADDAE VSTSDTSKSS VLSLANASAD NAAAQQASHA YNGNAAGGGG AFAELILHCS PNDSKPVQQQ PTLAYYAAQP
201: PSAHAASALS SFETMPHFSF LQEQPHPAVA FDRGTLQSNA AVAAPLWPTS QQACLLQRFA ASPADATGLP FFLGGSAAAS PMVPDNSEPR LQLWDFKQER
301: KT

Best Arabidopsis Sequence Match ( AT1G30210.1 )
(BLAST)

001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR

Arabidopsis Description

TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.