Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G031900.1 | Wheat | nucleus | 95.67 | 96.63 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 94.67 | 96.27 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 93.33 | 94.92 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 62.67 | 62.25 |
| Zm00001d022256_P001 | Maize | nucleus | 62.0 | 57.59 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 39.67 | 31.48 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 39.67 | 31.32 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 39.0 | 30.63 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 38.33 | 30.1 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 37.0 | 29.06 |
| AT1G30210.1 | Thale cress | nucleus | 30.67 | 28.4 |
| PGSC0003DMT400051253 | Potato | nucleus | 30.67 | 26.9 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 35.67 | 26.49 |
| Solyc08g048390.1.1 | Tomato | nucleus | 33.67 | 26.1 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 36.67 | 25.94 |
| AT4G18390.1 | Thale cress | nucleus | 31.0 | 25.48 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 37.67 | 25.45 |
| Solyc08g048370.2.1 | Tomato | cytosol | 27.33 | 25.15 |
| KRH42567 | Soybean | nucleus | 38.33 | 24.57 |
| KRH58674 | Soybean | nucleus | 37.33 | 23.43 |
| KRH11155 | Soybean | nucleus | 39.33 | 23.09 |
| KRH21093 | Soybean | nucleus | 39.33 | 22.18 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 20.0 | 21.43 |
| TraesCS2B01G025700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 12.33 | 18.14 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 18.0 | 17.53 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 24.67 | 16.44 |
| CDX78849 | Canola | nucleus, plastid | 12.67 | 15.9 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 12.67 | 15.9 |
| TraesCS5B01G205600.1 | Wheat | cytosol | 12.33 | 13.5 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 12.67 | 12.88 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 13.0 | 11.02 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G032000.1 | EnsemblPlantsGene:TraesCS5B01G032000 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF23 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5B:-:35188411..35189313
Molecular Weight (calculated)
32456.6 Da
IEP (calculated)
7.282
GRAVY (calculated)
-0.551
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEADKDRNS CKRLRAVGGG GDSADAWRSF RVARAAAGGK DRHSKVVTSR GLRDRRIRLS VQTAIQFYDI QDRLGVDQPS KAIEWLIQAA ATAIDGLPSL
101: DCSFAFPVAS PAAEDTAEVS TSETSKGSVL SLANGPADND NAAHQASAYN GGSANGTFAG LLHCSNAADK PMQHQHQQQQ PTLAYYAAPG SHIAPMSFEM
201: IPQLTFSQDQ QHCHHHHHHH HASVSFDRST LQSNTVSTPQ WPPSQHPFLM QRFSAAPAEP SPMFPFFLGG NNAAAAAAPA AANAPERRLQ LWDFKEERKT
101: DCSFAFPVAS PAAEDTAEVS TSETSKGSVL SLANGPADND NAAHQASAYN GGSANGTFAG LLHCSNAADK PMQHQHQQQQ PTLAYYAAPG SHIAPMSFEM
201: IPQLTFSQDQ QHCHHHHHHH HASVSFDRST LQSNTVSTPQ WPPSQHPFLM QRFSAAPAEP SPMFPFFLGG NNAAAAAAPA AANAPERRLQ LWDFKEERKT
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.