Factsheet for Zm00001d022256_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010341_P002
Zm00001d037086_P006
Zm00001d038134_P001
Zm00001d045080_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	Zm00001d037086_P006	AT4G14700.1	18818695
AT1G30210.1	Zm00001d045080_P001	AT4G14700.1	18818695
AT1G30210.1	Zm00001d010341_P002	AT5G13060.1	18818695
AT1G30210.1	Zm00001d038134_P001	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16387	Sorghum	cytosol, nucleus, plastid	81.73	87.42
TraesCS5D01G040100.1	Wheat	nucleus	56.97	62.37
TraesCS5B01G032000.1	Wheat	nucleus	57.59	62.0
HORVU5Hr1G008340.2	Barley	nucleus	56.35	61.69
TraesCS5A01G031900.1	Wheat	nucleus	56.66	61.62
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	36.22	30.71
GSMUA_Achr2P12990_001	Banana	nucleus	35.6	30.42
GSMUA_Achr7P01160_001	Banana	nucleus	34.98	29.58
GSMUA_Achr4P31520_001	Banana	nucleus	34.67	29.47
AT1G30210.1	Thale cress	nucleus	29.1	29.01
GSMUA_Achr5P02530_001	Banana	nucleus	34.06	28.8
GSMUA_Achr4P22960_001	Banana	nucleus	34.06	28.8
Zm00001d034353_P001	Maize	cytosol	33.75	28.24
Zm00001d018806_P001	Maize	nucleus	37.46	27.69
Zm00001d007868_P001	Maize	nucleus	36.84	27.05
VIT_10s0003g03910.t01	Wine grape	nucleus	36.22	26.35
PGSC0003DMT400051253	Potato	nucleus	27.86	26.32
Solyc08g048390.1.1	Tomato	nucleus	31.27	26.1
AT4G18390.1	Thale cress	nucleus	28.79	25.48
KRH42567	Soybean	nucleus	36.22	25.0
KRH58674	Soybean	nucleus	35.29	23.85
KRH11155	Soybean	nucleus	37.15	23.48
Solyc08g048370.2.1	Tomato	cytosol	23.22	23.01
Zm00001d010730_P001	Maize	cytosol, plastid	19.5	22.91
KRH21093	Soybean	nucleus	37.46	22.74
Zm00001d038683_P001	Maize	cytosol	19.2	20.81
Zm00001d043368_P001	Maize	cytosol	17.34	19.79
Zm00001d032217_P001	Maize	cytosol	13.93	18.75
Zm00001d008919_P001	Maize	nucleus, plastid	24.15	18.35
CDX78849	Canola	nucleus, plastid	13.0	17.57
Bra013304.1-P	Field mustard	nucleus, plastid	13.0	17.57
Zm00001d043423_P001	Maize	nucleus	21.36	15.9
Zm00001d050389_P001	Maize	nucleus	13.31	15.69
Zm00001d020433_P001	Maize	nucleus	11.76	15.02
Zm00001d039371_P001	Maize	mitochondrion	24.77	14.16
Zm00001d005737_P001	Maize	cytosol	12.07	14.13
Zm00001d013467_P001	Maize	nucleus	13.62	12.26
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.0	11.48
Zm00001d012725_P002	Maize	plastid	21.36	9.89

Protein Annotations

EntrezGene:103633471	MapMan:15.5.19	UniProt:A0A060CZ25	ProteinID:AIB04295.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	ProteinID:ONM59960.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF23	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000220AF3F	EnsemblPlantsGene:Zm00001d022256	EnsemblPlants:Zm00001d022256_P001
EnsemblPlants:Zm00001d022256_T001	SEG:seg	:	:	:	:

Description

TCP-transcription factor 38Transcription factor TCP2

Coordinates

chr7:-:173754099..173755070

Molecular Weight (calculated)

33714.4 Da

IEP (calculated)

8.247

GRAVY (calculated)

-0.250

Length

323 amino acids

Sequence
(BLAST)

001: MGRDGGRVRM SRVLATGDER GMGEVAGVER AACKRPRGAL DGGGSGSAAA WPACRVARAA AGGKDRHSKV VTARGLRDRR VRLSVPTAIQ FYDIQDRLGV
101: DQPSKAIEWL IRAAAAAIDG LPSLDCSFVF PHAAASPPGG AADDAELSTS ETSKSSVLSL ANAPVDNTAA HSQQDSHAYN NNAAAGGGAF ADLILHCSAN
201: NSSKPVQQQP TLAYYATQPP NAHSASAISF ETMLPHFSFL QEQPHHAIAF DRGTLQSNAA VAAPLWPTSQ HACLLQRFAA SPADATGLPS FFLGSGAAGA
301: SPVVPANAEP RLQLWDFKQE RKT

Best Arabidopsis Sequence Match ( AT1G30210.1 )
(BLAST)

001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR

Arabidopsis Description

TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.