Factsheet for Solyc08g048370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051253	Potato	nucleus	76.99	73.39
Solyc08g048390.1.1	Tomato	nucleus	70.86	59.69
OQU89064	Sorghum	cytosol	10.43	42.5
Solyc02g065800.1.1	Tomato	cytosol, plastid	18.4	42.25
VIT_10s0003g03910.t01	Wine grape	nucleus	49.69	36.49
AT4G18390.1	Thale cress	nucleus	37.42	33.42
CDY60877	Canola	nucleus	36.5	33.24
Bra012600.1-P	Field mustard	nucleus	37.42	31.94
CDY55633	Canola	nucleus	36.2	30.89
HORVU2Hr1G060120.1	Barley	nucleus	38.04	30.1
KRH11155	Soybean	nucleus	46.63	29.75
KRH58674	Soybean	nucleus	43.56	29.71
GSMUA_Achr5P02530_001	Banana	nucleus	34.66	29.58
GSMUA_Achr2P12990_001	Banana	nucleus	34.05	29.37
TraesCS2D01G252100.1	Wheat	nucleus	37.42	29.33
TraesCS2B01G265800.1	Wheat	nucleus	38.04	29.25
TraesCS5D01G040100.1	Wheat	nucleus	26.38	29.15
GSMUA_Achr7P01160_001	Banana	nucleus	34.05	29.06
CDY01537	Canola	nucleus	27.3	28.99
GSMUA_Achr4P31520_001	Banana	nucleus	33.74	28.95
KRH42567	Soybean	nucleus	41.41	28.85
HORVU5Hr1G008340.2	Barley	nucleus	26.07	28.81
TraesCS5A01G031900.1	Wheat	nucleus	26.07	28.62
KRH21093	Soybean	nucleus	45.4	27.82
Zm00001d007868_P001	Maize	nucleus	37.12	27.5
TraesCS5B01G032000.1	Wheat	nucleus	25.15	27.33
GSMUA_Achr4P22960_001	Banana	nucleus	31.29	26.7
Zm00001d018806_P001	Maize	nucleus	35.58	26.54
Os07t0152000-01	Rice	nucleus	36.2	26.52
EER95875	Sorghum	cytosol, nucleus, peroxisome	36.5	25.81
Solyc10g018710.1.1	Tomato	nucleus	13.5	25.73
EES16387	Sorghum	cytosol, nucleus, plastid	23.62	25.5
HORVU5Hr1G103400.1	Barley	nucleus	30.98	25.25
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	29.45	25.2
Zm00001d034353_P001	Maize	cytosol	29.75	25.13
Os03t0785800-01	Rice	nucleus	27.3	24.93
TraesCS5A01G423900.1	Wheat	cytosol	30.67	24.69
TraesCS5D01G432500.1	Wheat	nucleus	30.37	24.69
KXG37409	Sorghum	cytosol	29.45	24.68
TraesCS5B01G426200.1	Wheat	nucleus	30.37	24.5
Solyc07g053410.2.1	Tomato	cytosol	18.1	24.18
Solyc02g089020.1.1	Tomato	nucleus, plastid	20.86	23.94
Zm00001d022256_P001	Maize	nucleus	23.01	23.22
Solyc06g069460.1.1	Tomato	plastid	19.63	23.02
Solyc05g012840.1.1	Tomato	nucleus	15.64	22.87
TraesCS2A01G251100.1	Wheat	plastid, vacuole	37.73	22.45
Solyc05g032780.1.1	Tomato	nucleus	13.5	20.75
Solyc11g045640.1.1	Tomato	nucleus	13.8	20.55
Solyc03g115010.1.1	Tomato	plastid	20.55	19.65
Solyc07g062680.1.1	Tomato	nucleus	23.31	19.0
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	13.5	18.26
Solyc03g045030.1.1	Tomato	nucleus	9.82	17.49
Solyc12g014140.1.1	Tomato	nucleus	19.63	16.24
Solyc03g119770.2.1	Tomato	nucleus	16.87	15.9
Solyc02g077250.2.1	Tomato	nucleus	15.95	14.69
Solyc04g006980.1.1	Tomato	nucleus	15.64	13.6
Solyc05g009900.1.1	Tomato	nucleus	14.11	13.03
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	8.28	12.98
Solyc06g069240.1.1	Tomato	nucleus	15.95	12.81
Solyc10g008780.1.1	Tomato	nucleus	17.48	9.79

Protein Annotations

MapMan:15.5.19	InterPro:CYC/TB1_R_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
InterPro:IPR017888	UniProt:K4CKI9	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072
PANTHER:PTHR31072:SF2	EnsemblPlantsGene:Solyc08g048370.2	EnsemblPlants:Solyc08g048370.2.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000276C866
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:13379342..13384360

Molecular Weight (calculated)

36486.1 Da

IEP (calculated)

8.831

GRAVY (calculated)

-0.633

Length

326 amino acids

Sequence
(BLAST)

001: MSNKEDEQYD VGEVKKSGDL GGGIGKLYGW PTSRIVRVSR ASGGKDRHSK VLTSKGLRDR RVRLSVNTAI QFYDLQDRLG CDQPSKVVEW LLKAAAPSIA
101: ELPPLEDLQD TLQLSNEKRS SEHGFDSADV EMDDDLNYNN QQQPSCSNSE TSKGSGLSLS RSDSRVKARE RARERATEKV ANHHRNMHPS SSFTELLTGG
201: MSDNNNNKTS VNDDQNTPRQ WSTNPLEYFT DGQIYLGNTL RPVSPPMFSI TGGPFSPILP LLCLVIRGTD HILVPQLDMT TSIQIRKEKK RSNFKFHLVI
301: LNGSSLKVPK EAPIYAFLCY RLIILY

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.