Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g018710.1.1 | Tomato | nucleus | 71.7 | 88.89 |
| Solyc11g045640.1.1 | Tomato | nucleus | 90.57 | 87.67 |
| Solyc05g012840.1.1 | Tomato | nucleus | 62.74 | 59.64 |
| PGSC0003DMT400059117 | Potato | nucleus | 87.74 | 55.69 |
| Solyc02g077250.2.1 | Tomato | nucleus | 91.98 | 55.08 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 19.34 | 28.87 |
| Solyc07g053410.2.1 | Tomato | cytosol | 29.72 | 25.82 |
| GSMUA_Achr8P19990_001 | Banana | nucleus | 27.83 | 24.48 |
| Solyc10g008780.1.1 | Tomato | nucleus | 51.42 | 18.73 |
| Solyc12g014140.1.1 | Tomato | nucleus | 30.66 | 16.5 |
| Solyc07g062680.1.1 | Tomato | nucleus | 30.66 | 16.25 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 32.55 | 15.33 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 32.55 | 15.2 |
| Solyc06g069460.1.1 | Tomato | plastid | 19.81 | 15.11 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 32.55 | 15.1 |
| Solyc03g045030.1.1 | Tomato | nucleus | 12.74 | 14.75 |
| Solyc02g089020.1.1 | Tomato | nucleus, plastid | 19.34 | 14.44 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 28.3 | 14.12 |
| Solyc03g115010.1.1 | Tomato | plastid | 22.17 | 13.78 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 15.57 | 13.69 |
| Solyc08g048370.2.1 | Tomato | cytosol | 20.75 | 13.5 |
| Zm00001d043423_P001 | Maize | nucleus | 26.89 | 13.13 |
| KXG33398 | Sorghum | nucleus | 27.83 | 13.08 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 26.89 | 12.78 |
| Solyc08g048390.1.1 | Tomato | nucleus | 22.17 | 12.14 |
| Zm00001d039371_P001 | Maize | mitochondrion | 31.6 | 11.86 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 32.55 | 11.69 |
| Os01t0213800-01 | Rice | mitochondrion | 31.13 | 11.4 |
| OQU86111 | Sorghum | plastid | 31.13 | 10.53 |
| Solyc05g009900.1.1 | Tomato | nucleus | 16.98 | 10.2 |
| Solyc03g119770.2.1 | Tomato | nucleus | 16.04 | 9.83 |
| Solyc04g006980.1.1 | Tomato | nucleus | 16.98 | 9.6 |
| Zm00001d012725_P002 | Maize | plastid | 27.36 | 8.31 |
| Solyc06g069240.1.1 | Tomato | nucleus | 14.62 | 7.64 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 6.13 | 6.05 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | UniProt:K4C059 |
| PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | EnsemblPlantsGene:Solyc05g032780.1 | EnsemblPlants:Solyc05g032780.1.1 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00027660C3 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:44839369..44840007
Molecular Weight (calculated)
24419.1 Da
IEP (calculated)
5.056
GRAVY (calculated)
-1.174
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHQCQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSVCENP EKWANFTVSG QELNKGTRRL KPKRAKTDVI EGHGGRIIRA TGRKYRHSNV
101: STAKGPKDRR VRLSPNTAIQ FYDVQDRLGY DRPCKAIDSL IKEAKVTIDA LGEFPNNFHS TKLNPKKMQY SFDQEQSPEF SQENRGVPNS ECGVQDKQQE
201: VNYDIPNMFS LY
101: STAKGPKDRR VRLSPNTAIQ FYDVQDRLGY DRPCKAIDSL IKEAKVTIDA LGEFPNNFHS TKLNPKKMQY SFDQEQSPEF SQENRGVPNS ECGVQDKQQE
201: VNYDIPNMFS LY
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.