Factsheet for Solyc06g069460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010453	Potato	nucleus, plastid	86.33	78.69
Solyc02g065800.1.1	Tomato	cytosol, plastid	24.46	47.89
Solyc03g115010.1.1	Tomato	plastid	44.96	36.66
Solyc02g089020.1.1	Tomato	nucleus, plastid	34.89	34.15
GSMUA_Achr4P32850_001	Banana	nucleus	34.17	27.7
GSMUA_Achr6P27420_001	Banana	nucleus	28.42	26.42
Solyc10g018710.1.1	Tomato	nucleus	15.83	25.73
Solyc05g012840.1.1	Tomato	nucleus	16.91	21.08
Solyc07g053410.2.1	Tomato	cytosol	17.99	20.49
Solyc11g045640.1.1	Tomato	nucleus	15.83	20.09
Solyc05g032780.1.1	Tomato	nucleus	15.11	19.81
Solyc08g048370.2.1	Tomato	cytosol	23.02	19.63
Solyc08g048390.1.1	Tomato	nucleus	24.82	17.83
Solyc03g045030.1.1	Tomato	nucleus	10.79	16.39
Solyc07g062680.1.1	Tomato	nucleus	22.66	15.75
Solyc12g014140.1.1	Tomato	nucleus	20.86	14.72
Solyc02g077250.2.1	Tomato	nucleus	18.35	14.41
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	12.23	14.11
Solyc05g009900.1.1	Tomato	nucleus	15.11	11.9
Solyc03g119770.2.1	Tomato	nucleus	13.67	10.98
Solyc04g006980.1.1	Tomato	nucleus	14.03	10.4
Solyc06g069240.1.1	Tomato	nucleus	14.75	10.1
Solyc10g008780.1.1	Tomato	nucleus	18.7	8.93

Protein Annotations

MapMan:15.5.19	UniProt:G3BGU6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:GQ496324
InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF24	EnsemblPlantsGene:Solyc06g069460.1
EnsemblPlants:Solyc06g069460.1.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00022A26A1	SEG:seg	:

Description

TCP transcription factor 6 [Source:UniProtKB/TrEMBL;Acc:G3BGU6]

Coordinates

chr6:-:43209518..43210354

Molecular Weight (calculated)

30896.7 Da

IEP (calculated)

9.411

GRAVY (calculated)

-0.764

Length

278 amino acids

Sequence
(BLAST)

001: MNSRKQETGS GVDTNNSKTT STTTATTIPS SSSSRQSSSW GGGFKNPRIV RVSRSFGGKD RHSKVCTVKG LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK
101: VVDWLIDATK DEIDKLPPLQ IPPPSLSHFF STKDHHNLDF VDTGLFGKDR WIATTNDQES SNHLIFQSSN LGMLNTFSNS WEPNSNLSLG PFGNYQDQYQ
201: QQQNMPLIPS SSHHQQQQLY FCPTSSSTTT LSSLVPPYNS HFHPNSIAPT LQLTTSPVKS SFSLQDHHQH NHKEGSGS

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.