Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002153 | Potato | nucleus | 92.35 | 92.09 |
| Solyc04g006980.1.1 | Tomato | nucleus | 48.73 | 45.87 |
| Solyc03g045030.1.1 | Tomato | nucleus | 15.86 | 30.6 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 18.13 | 26.56 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 10.2 | 25.35 |
| Bra038350.1-P | Field mustard | nucleus | 23.23 | 24.48 |
| CDY45852 | Canola | nucleus | 22.95 | 24.4 |
| CDX81550 | Canola | nucleus | 23.23 | 24.26 |
| CDY33597 | Canola | nucleus | 21.25 | 23.22 |
| AT1G68800.2 | Thale cress | nucleus | 23.51 | 22.93 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 17.0 | 22.73 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 17.28 | 22.34 |
| Solyc10g018710.1.1 | Tomato | nucleus | 10.48 | 21.64 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 17.28 | 20.68 |
| Solyc03g119770.2.1 | Tomato | nucleus | 20.11 | 20.52 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 18.98 | 20.3 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 17.0 | 20.2 |
| Solyc06g069240.1.1 | Tomato | nucleus | 21.81 | 18.97 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 22.95 | 18.49 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 18.13 | 17.93 |
| Solyc11g045640.1.1 | Tomato | nucleus | 11.05 | 17.81 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 17.56 | 17.61 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 17.0 | 17.05 |
| Solyc05g012840.1.1 | Tomato | nucleus | 10.76 | 17.04 |
| Solyc05g032780.1.1 | Tomato | nucleus | 10.2 | 16.98 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 17.0 | 16.95 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 17.56 | 16.32 |
| Os03t0706500-01 | Rice | nucleus | 17.56 | 15.98 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 16.43 | 15.85 |
| Solyc02g089020.1.1 | Tomato | nucleus, plastid | 12.46 | 15.49 |
| Solyc07g053410.2.1 | Tomato | cytosol | 10.48 | 15.16 |
| Solyc06g069460.1.1 | Tomato | plastid | 11.9 | 15.11 |
| Zm00001d013467_P001 | Maize | nucleus | 15.3 | 15.04 |
| Solyc08g048370.2.1 | Tomato | cytosol | 13.03 | 14.11 |
| Solyc12g014140.1.1 | Tomato | nucleus | 14.45 | 12.94 |
| Solyc07g062680.1.1 | Tomato | nucleus | 14.45 | 12.75 |
| Solyc08g048390.1.1 | Tomato | nucleus | 13.88 | 12.66 |
| Solyc02g077250.2.1 | Tomato | nucleus | 12.46 | 12.43 |
| Solyc03g115010.1.1 | Tomato | plastid | 11.05 | 11.44 |
| Solyc10g008780.1.1 | Tomato | nucleus | 13.31 | 8.08 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | UniProt:K4BXG4 |
| PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF22 | EnsemblPlantsGene:Solyc05g009900.1 | EnsemblPlants:Solyc05g009900.1.1 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002766E20 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:+:4125179..4126240
Molecular Weight (calculated)
40363.1 Da
IEP (calculated)
9.256
GRAVY (calculated)
-0.986
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPKSNIIHD PFSFTSQELL KQSYSTHDQN PNSPSKVVED EDHPFFLNNF FPSPFLDDHE LPLNQIFSQK HHQKQEASDN HDINQADPDN TIKDNHSVDN
101: SRSTQLNTKI MGDQSSNPAI SSKKRKLSAK PRRRTGKKDR HSKICTAQGV RDRRMRLSLQ IARKFFDLQD MLGFDKASNT IEWLFSKSKN AIKELSRNIS
201: QESNSSDQNN DDHRKLRKIG SSDKPIRAKT REKTKEKMMI KLGHNKKGNQ ELDETNPMST IDPKLGSNPK SLEHQFANVG IMERYLGGAS YSSITSIFDY
301: DNNGVIKGNI DISDNCFNMG ILENCSMTNE VQIPFSGNNP SSIYLDYSRF HQF
101: SRSTQLNTKI MGDQSSNPAI SSKKRKLSAK PRRRTGKKDR HSKICTAQGV RDRRMRLSLQ IARKFFDLQD MLGFDKASNT IEWLFSKSKN AIKELSRNIS
201: QESNSSDQNN DDHRKLRKIG SSDKPIRAKT REKTKEKMMI KLGHNKKGNQ ELDETNPMST IDPKLGSNPK SLEHQFANVG IMERYLGGAS YSSITSIFDY
301: DNNGVIKGNI DISDNCFNMG ILENCSMTNE VQIPFSGNNP SSIYLDYSRF HQF
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
Arabidopsis Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.