Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G040100.1 | Wheat | nucleus | 89.08 | 90.34 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 88.52 | 89.77 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 88.8 | 89.55 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 59.94 | 56.32 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 57.42 | 56.01 |
| Os03t0706500-01 | Rice | nucleus | 60.78 | 55.93 |
| Zm00001d013467_P001 | Maize | nucleus | 53.78 | 53.48 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 33.33 | 40.07 |
| HORVU5Hr1G061270.1 | Barley | nucleus | 22.41 | 29.3 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 18.21 | 27.31 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 19.33 | 26.44 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 17.65 | 26.14 |
| PGSC0003DMT400010380 | Potato | nucleus | 19.89 | 25.45 |
| PGSC0003DMT400008673 | Potato | nucleus | 10.64 | 24.2 |
| Solyc03g045030.1.1 | Tomato | nucleus | 12.32 | 24.04 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 21.29 | 23.03 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 20.73 | 22.84 |
| CDY33597 | Canola | nucleus | 20.17 | 22.29 |
| KRH45185 | Soybean | plastid | 22.97 | 22.16 |
| CDY18525 | Canola | nucleus | 17.37 | 21.91 |
| CDX95517 | Canola | nucleus | 17.37 | 21.91 |
| CDX81550 | Canola | nucleus | 20.73 | 21.89 |
| Bra037579.1-P | Field mustard | nucleus | 17.37 | 21.75 |
| CDY45852 | Canola | nucleus | 20.17 | 21.69 |
| KRH01497 | Soybean | plastid | 22.41 | 21.62 |
| Bra038350.1-P | Field mustard | nucleus | 20.17 | 21.49 |
| KRH03810 | Soybean | nucleus | 22.13 | 20.79 |
| KRH56692 | Soybean | nucleus | 21.57 | 20.48 |
| CDY01793 | Canola | nucleus | 20.17 | 20.4 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 20.73 | 20.22 |
| AT1G67260.1 | Thale cress | nucleus | 19.89 | 19.78 |
| AT1G68800.2 | Thale cress | nucleus | 19.89 | 19.61 |
| CDY12633 | Canola | nucleus | 17.65 | 19.57 |
| Solyc04g006980.1.1 | Tomato | nucleus | 20.45 | 19.47 |
| Solyc06g069240.1.1 | Tomato | nucleus | 22.13 | 19.46 |
| PGSC0003DMT400019324 | Potato | nucleus | 20.73 | 19.42 |
| CDX96104 | Canola | nucleus | 19.05 | 19.37 |
| Bra004212.1-P | Field mustard | nucleus | 18.49 | 19.35 |
| KRG93829 | Soybean | nucleus, plastid | 22.41 | 19.23 |
| CDY46042 | Canola | nucleus | 18.49 | 19.08 |
| KRH18263 | Soybean | plastid | 22.13 | 18.85 |
| Solyc03g119770.2.1 | Tomato | nucleus | 18.21 | 18.79 |
| KRH63057 | Soybean | nucleus | 20.17 | 18.7 |
| PGSC0003DMT400014572 | Potato | nucleus | 19.61 | 18.52 |
| Bra034010.1-P | Field mustard | nucleus | 17.93 | 18.5 |
| CDY07432 | Canola | nucleus | 18.21 | 18.47 |
| KRH35497 | Soybean | nucleus | 19.61 | 18.42 |
| KRG91334 | Soybean | nucleus | 19.33 | 18.4 |
| Solyc05g009900.1.1 | Tomato | nucleus | 17.93 | 18.13 |
| CDY28898 | Canola | nucleus | 17.93 | 18.08 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 22.13 | 18.04 |
| KRH54810 | Soybean | nucleus | 19.89 | 17.93 |
| Bra004097.1-P | Field mustard | nucleus | 17.09 | 17.58 |
| PGSC0003DMT400002153 | Potato | nucleus | 17.37 | 17.51 |
| CDX82339 | Canola | nucleus | 20.73 | 17.45 |
| CDY52898 | Canola | nucleus | 20.73 | 17.41 |
| Bra001710.1-P | Field mustard | nucleus | 20.73 | 17.41 |
| AT3G18550.3 | Thale cress | nucleus | 21.01 | 17.28 |
| CDY62798 | Canola | nucleus | 19.89 | 17.27 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 16.81 | 14.56 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 15.97 | 14.25 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 10.36 | 13.31 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 10.92 | 13.22 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 9.8 | 11.99 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 16.81 | 10.17 |
| HORVU3Hr1G072670.2 | Barley | nucleus | 3.92 | 5.98 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 3.36 | 5.58 |
Protein Annotations
| MapMan:15.5.19 | InterPro:CYC/TB1_R_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0048831 | EnsemblPlantsGene:HORVU4Hr1G007040 | EnsemblPlants:HORVU4Hr1G007040.1 | InterPro:IPR017887 | InterPro:IPR017888 | UniProt:M0YK32 |
| PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI000296A897 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:17599034..17600737
Molecular Weight (calculated)
38248.7 Da
IEP (calculated)
7.110
GRAVY (calculated)
-0.673
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPFYDSPSP MDLPLYQQLQ LSPPSPKAPD HQSLLYYHSS PAFAADPFHH NYLCAGAGAG SGAGEATPPA AEIDDQSPSE LLLMDQAPAP RPDGAGKAQG
101: LHGGGGLDSA AARKDRHSKI CTAGGMRDRR MRLSLDVARK FFALQDMLGF DKASKTVQWL LNTSKGAIKE VMTDEASSDC EEDGSSSLSV ADGKHKQPGT
201: EAGGGDHADG KKPAPRASKR APANPKPQRK LASAHLIPDK ESRTKARERA RERTREKNRM RWVTLASTIN IEPATTGMAA ARLDELVTSP NNLINRSSSM
301: NTPGAELEEG CSSSMPSEAI MAGFGNGGYG SIGNYYQHQL EQQWELGGVV FANSQHY
101: LHGGGGLDSA AARKDRHSKI CTAGGMRDRR MRLSLDVARK FFALQDMLGF DKASKTVQWL LNTSKGAIKE VMTDEASSDC EEDGSSSLSV ADGKHKQPGT
201: EAGGGDHADG KKPAPRASKR APANPKPQRK LASAHLIPDK ESRTKARERA RERTREKNRM RWVTLASTIN IEPATTGMAA ARLDELVTSP NNLINRSSSM
301: NTPGAELEEG CSSSMPSEAI MAGFGNGGYG SIGNYYQHQL EQQWELGGVV FANSQHY
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGMSTPREH NTTSIATVDE EKSPISSFSL YDYLCY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGMSTPREH NTTSIATVDE EKSPISSFSL YDYLCY
Arabidopsis Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.