CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82339	Canola	nucleus	92.47	92.69
Bra001710.1-P	Field mustard	nucleus	92.47	92.47
CDY62798	Canola	nucleus	74.35	76.89
CDY18525	Canola	nucleus	47.29	71.02
CDX95517	Canola	nucleus	46.59	69.96
AT3G18550.3	Thale cress	nucleus	69.65	68.2
PGSC0003DMT400010380	Potato	nucleus	16.47	25.09
CDY45852	Canola	nucleus	18.82	24.1
CDX81550	Canola	nucleus	19.06	23.96
TraesCS5A01G001900.1	Wheat	nucleus	15.29	23.81
CDY33597	Canola	nucleus	17.88	23.53
VIT_17s0000g04180.t01	Wine grape	nucleus	20.0	23.22
Solyc03g119770.2.1	Tomato	nucleus	18.59	22.83
TraesCS5B01G002300.1	Wheat	nucleus	15.53	22.37
KRH56692	Soybean	nucleus	19.76	22.34
KRH03810	Soybean	nucleus	19.76	22.11
TraesCS5D01G002300.1	Wheat	nucleus	13.65	21.97
TraesCS4D01G040100.1	Wheat	nucleus	18.12	21.88
TraesCS4A01G271300.1	Wheat	nucleus	18.12	21.88
TraesCS4B01G042700.1	Wheat	nucleus	18.12	21.75
KRH63057	Soybean	nucleus	19.53	21.56
HORVU5Hr1G000490.1	Barley	nucleus	14.82	21.21
HORVU4Hr1G007040.1	Barley	nucleus	17.41	20.73
Solyc06g069240.1.1	Tomato	nucleus	19.76	20.69
PGSC0003DMT400014572	Potato	nucleus	18.12	20.37
KRH54810	Soybean	nucleus	18.59	19.95
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	17.18	19.95
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	17.65	19.74
Zm00001d013467_P001	Maize	nucleus	16.47	19.5
Os03t0706500-01	Rice	nucleus	16.71	18.3
CDY12633	Canola	nucleus	12.94	17.08
CDY01793	Canola	nucleus	14.12	17.0
CDX99891	Canola	nucleus	12.47	16.72
CDX96104	Canola	nucleus	13.65	16.52
CDY46042	Canola	nucleus	13.41	16.47
CDY26285	Canola	nucleus	12.24	16.35
CDY07432	Canola	nucleus	12.94	15.62
CDY28898	Canola	nucleus	12.94	15.54
CDY59229	Canola	nucleus	11.29	15.34
CDX81083	Canola	nucleus, plastid	8.71	15.16
CDY60877	Canola	nucleus	12.71	15.08
CDX74272	Canola	nucleus	11.29	15.0
CDX91977	Canola	nucleus	11.29	15.0
CDX90234	Canola	nucleus	10.82	14.94
CDY01537	Canola	nucleus	10.59	14.66
CDX78321	Canola	nucleus, plastid	8.24	14.23
CDY55633	Canola	nucleus	12.0	13.35
CDY58696	Canola	nucleus	10.59	12.36
CDY47005	Canola	nucleus, plastid	8.71	12.29
CDY68618	Canola	nucleus, plastid	8.71	12.25
CDY60475	Canola	endoplasmic reticulum, golgi	11.29	12.09
CDY02180	Canola	nucleus	10.35	12.02
CDY68596	Canola	cytosol, nucleus	10.59	11.66
CDY02519	Canola	nucleus	9.18	11.34
CDY20097	Canola	nucleus	9.41	11.2
CDY43255	Canola	endoplasmic reticulum, golgi	11.29	11.19
CDY10771	Canola	nucleus	8.94	10.95
CDY24724	Canola	nucleus	8.94	10.92
CDX75802	Canola	nucleus	10.35	10.89
CDX82453	Canola	nucleus	10.35	10.86
CDY10772	Canola	nucleus	8.71	10.69
CDX78849	Canola	nucleus, plastid	4.24	7.53
CDX97627	Canola	mitochondrion	1.88	2.92

Protein Annotations

MapMan:15.5.19	UniProt:A0A078IV77	EnsemblPlants:CDY52898	ProteinID:CDY52898	ProteinID:CDY52898.1	InterPro:CYC/TB1_R_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00008067001	InterPro:IPR017887	InterPro:IPR017888
PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI0004EEDE1D	SEG:seg	:	:	:

Description

BnaCnng23770DBnaCnng23770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV77]

Coordinates

chrLK033140:-:26496..28349

Molecular Weight (calculated)

48616.4 Da

IEP (calculated)

8.664

GRAVY (calculated)

-0.828

Length

425 amino acids

Sequence
(BLAST)

001: MNNNNRRSLS TTTTISEDYM LFPYNDHYSS QALLPFSPCS SINDILIPSN FNTSNNHLDH HYQFLQAPSS FSQFEFVPDF ALVASFLPQN NGHNDNQTIT
101: TNDHNHHHHH PSLLPLNNPV GKSLVEPLET ITTHIEDSRK ISTSQDPKMN KVKKPSRTDR HSKIKTAKGT RDRRMRLSLD VAKELFGLQD MLGFDKASKT
201: VEWLLTQAKP EIIKIMSSLS NPLNHGGFSS CEESQTRPAL GSMHTSSDLC KLSSMGTVED RGSNTNSTET RGNKVDGISM RGKRKMLQAR TPILKKLSKD
301: EREKARERAK DRTKEKMMKR ISQVNILDEE AHNHHDEIVK NNKSHVNCKY FEATPCQEAI EELLCKNDGF AVCNEFLVNK FNSSFPMPNH HRSQGTASSI
401: EQQRQFMDLH HFLERPRDLM YNYHI

Best Arabidopsis Sequence Match ( AT3G18550.4 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.