CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60475	Canola	endoplasmic reticulum, golgi	82.75	89.42
CDX74272	Canola	nucleus	56.64	75.94
CDX91977	Canola	nucleus	56.64	75.94
AT3G02150.2	Thale cress	nucleus	57.58	69.58
Solyc02g065800.1.1	Tomato	cytosol, plastid	17.72	53.52
VIT_14s0068g00330.t01	Wine grape	nucleus	30.07	36.96
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	17.48	34.4
KRG93654	Soybean	nucleus	29.6	33.96
KRH45058	Soybean	nucleus	27.04	32.68
CDX78321	Canola	nucleus, plastid	18.41	32.11
KRH01308	Soybean	cytosol	28.67	32.03
CDX81083	Canola	nucleus, plastid	18.18	31.97
Zm00001d010730_P001	Maize	cytosol, plastid	19.58	30.55
Zm00001d038683_P001	Maize	cytosol	20.28	29.19
HORVU1Hr1G077080.1	Barley	nucleus	19.81	29.11
Os05t0513100-01	Rice	nucleus	19.81	28.91
EES18493	Sorghum	cytosol	20.05	28.86
TraesCS3D01G298900.1	Wheat	nucleus	18.41	28.73
EES03657	Sorghum	nucleus	19.35	28.72
TraesCS1D01G335300.1	Wheat	nucleus	20.75	28.43
TraesCS1A01G332600.1	Wheat	nucleus	20.28	28.43
TraesCS3A01G302900.1	Wheat	nucleus	18.41	28.42
Zm00001d043368_P001	Maize	cytosol	18.65	28.27
TraesCS3B01G333400.1	Wheat	nucleus	18.41	28.21
TraesCS1B01G346300.1	Wheat	nucleus	20.05	27.92
HORVU3Hr1G073830.1	Barley	nucleus	17.95	27.7
Os01t0763200-01	Rice	cytosol	19.35	27.04
CDY47005	Canola	nucleus, plastid	18.88	26.91
CDY68618	Canola	nucleus, plastid	18.88	26.82
CDY02180	Canola	nucleus	21.21	24.86
CDY58696	Canola	nucleus	20.75	24.45
CDX99891	Canola	nucleus	15.62	21.14
CDY26285	Canola	nucleus	15.38	20.75
CDX90234	Canola	nucleus	14.69	20.45
CDY59229	Canola	nucleus	14.92	20.45
CDY01537	Canola	nucleus	14.45	20.2
CDY60877	Canola	nucleus	15.85	18.99
CDY55633	Canola	nucleus	16.08	18.06
CDY02519	Canola	nucleus	14.45	18.02
CDY20097	Canola	nucleus	13.52	16.25
CDY10772	Canola	nucleus	13.05	16.18
CDY10771	Canola	nucleus	13.05	16.14
CDY24724	Canola	nucleus	13.05	16.09
CDX75802	Canola	nucleus	15.15	16.09
CDY68596	Canola	cytosol, nucleus	14.22	15.8
CDX82453	Canola	nucleus	14.92	15.8
CDX95517	Canola	nucleus	10.02	15.19
CDY18525	Canola	nucleus	10.02	15.19
CDY12633	Canola	nucleus	11.19	14.91
CDX96104	Canola	nucleus	11.89	14.53
CDY07432	Canola	nucleus	11.65	14.2
CDY01793	Canola	nucleus	11.65	14.16
CDY46042	Canola	nucleus	11.42	14.16
CDY28898	Canola	nucleus	11.65	14.12
CDY52898	Canola	nucleus	11.19	11.29
CDY33597	Canola	nucleus	8.39	11.15
CDY45852	Canola	nucleus	8.62	11.14
CDX81550	Canola	nucleus	8.62	10.95
CDX82339	Canola	nucleus	10.72	10.85
CDY62798	Canola	nucleus	10.26	10.71
CDX97627	Canola	mitochondrion	3.26	5.11
CDX78849	Canola	nucleus, plastid	2.8	5.02

Protein Annotations

MapMan:15.5.19	GO:A0A078HXJ5	UniProt:A0A078HXJ5	EnsemblPlants:CDY43255	ProteinID:CDY43255	ProteinID:CDY43255.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00076286001
InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr
TMHMM:TMhelix	InterPro:Transcription_factor_TCP	UniParc:UPI0004EDE9C9	SEG:seg	:	:

Description

BnaC05g48480DBnaC05g48480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXJ5]

Coordinates

chrLK032550:-:109833..111759

Molecular Weight (calculated)

48457.5 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.347

Length

429 amino acids

Sequence
(BLAST)

001: MFNNLRSSRM LVWDLLLSRT IIAIHILYVD NMISELCFSS VLIFTSKSIY LFLIFFFFSY SHFIHAFKKE KRNQILFSLY FSSLFSPSSS SSSYYSLYQI
101: VKTLDLLFKL MTVQTQELNT SVMNTGPWRD ANDDVSGGTR TRRIVEEDSE EAVVVAVATS GKPVIKKPPT SISSSSSSWM KSKDPRIVRV SRAFGGKDRH
201: SKVCTLRGLR DRRVRLSVPT AIQLYDLQER LGLDQPSKAV DWLLNAAKEE IDELPPLPVS PETFSLFNHH QAFLNLSQPP GQDSTQLGFK TNGCVEESNT
301: TTSREETKNN HIGSYGTYQN MEQHQQQHTR FQADYPHHQH QLHSLVPIQS QFLVCPMTAS STTTTIQSLF PSSSSAGSRT METTDPRQMV SHFQMPSMGS
401: SSSSQNISTL YSLLHGGSNP MPSVQFNRK

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.