Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31070.1 | CDX83200 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | CDY21475 | AT2G22840.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10771 | Canola | nucleus | 99.13 | 98.85 |
| CDY24724 | Canola | nucleus | 99.13 | 98.56 |
| Bra018280.1-P | Field mustard | nucleus | 98.55 | 97.71 |
| AT2G31070.1 | Thale cress | nucleus | 85.26 | 81.72 |
| KRH22307 | Soybean | nucleus | 42.2 | 42.44 |
| KRH27017 | Soybean | nucleus | 41.62 | 41.98 |
| Solyc07g053410.2.1 | Tomato | cytosol | 28.61 | 40.57 |
| KRH25697 | Soybean | nucleus | 33.81 | 40.21 |
| PGSC0003DMT400024329 | Potato | nucleus | 34.68 | 38.59 |
| KRH55819 | Soybean | nucleus | 34.39 | 35.74 |
| CDY02519 | Canola | nucleus | 35.26 | 35.47 |
| CDY68596 | Canola | cytosol, nucleus | 37.28 | 33.42 |
| CDY20097 | Canola | nucleus | 33.81 | 32.77 |
| CDX82453 | Canola | nucleus | 37.86 | 32.35 |
| CDX75802 | Canola | nucleus | 36.99 | 31.68 |
| CDY60877 | Canola | nucleus | 22.54 | 21.79 |
| CDX90234 | Canola | nucleus | 19.36 | 21.75 |
| CDX97627 | Canola | mitochondrion | 17.05 | 21.53 |
| CDY59229 | Canola | nucleus | 19.08 | 21.09 |
| CDY01537 | Canola | nucleus | 18.21 | 20.52 |
| CDY55633 | Canola | nucleus | 21.97 | 19.9 |
| CDY26285 | Canola | nucleus | 18.21 | 19.81 |
| CDX91977 | Canola | nucleus | 18.21 | 19.69 |
| CDX74272 | Canola | nucleus | 18.21 | 19.69 |
| CDX99891 | Canola | nucleus | 17.92 | 19.56 |
| CDX81083 | Canola | nucleus, plastid | 13.58 | 19.26 |
| CDX78321 | Canola | nucleus, plastid | 13.58 | 19.11 |
| CDY47005 | Canola | nucleus, plastid | 13.29 | 15.28 |
| CDY68618 | Canola | nucleus, plastid | 13.29 | 15.23 |
| CDY12633 | Canola | nucleus | 13.58 | 14.6 |
| CDY58696 | Canola | nucleus | 15.32 | 14.56 |
| CDY02180 | Canola | nucleus | 15.32 | 14.48 |
| CDY07432 | Canola | nucleus | 14.45 | 14.2 |
| CDY01793 | Canola | nucleus | 14.16 | 13.88 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 15.9 | 13.85 |
| CDY28898 | Canola | nucleus | 14.16 | 13.84 |
| CDX96104 | Canola | nucleus | 13.87 | 13.68 |
| CDY46042 | Canola | nucleus | 13.29 | 13.29 |
| CDY18525 | Canola | nucleus | 10.69 | 13.07 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 16.18 | 13.05 |
| CDX95517 | Canola | nucleus | 10.4 | 12.72 |
| CDY33597 | Canola | nucleus | 11.56 | 12.38 |
| CDX81550 | Canola | nucleus | 11.85 | 12.13 |
| CDY45852 | Canola | nucleus | 11.56 | 12.05 |
| CDX78849 | Canola | nucleus, plastid | 8.09 | 11.72 |
| CDY62798 | Canola | nucleus | 11.27 | 9.49 |
| CDX82339 | Canola | nucleus | 10.69 | 8.73 |
| CDY52898 | Canola | nucleus | 10.69 | 8.71 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078FCP6 | EnsemblPlants:CDY10772 | ProteinID:CDY10772 | ProteinID:CDY10772.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00048597001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF13 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EEAD50 | SEG:seg |
Description
BnaA05g11640DBnaA05g11640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCP6]
Coordinates
chrLK032006:-:591732..593760
Molecular Weight (calculated)
38397.3 Da
IEP (calculated)
6.935
GRAVY (calculated)
-0.866
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLKGYSAGD GVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPPENDTTK
101: PGSSSSEPNL ADTQTHFVAA NLDPEDAMKT FFPATTRGGG TNMNFQNYPH HHDADNIVSR TTTTTPNLSQ DLGLSLHPFQ GNNINSTVVP ETNNFATAHF
201: ETFGRISGWN HHDLTMTSSS SPSEQQEEQE RGNGGFMVNL HHHQPSMMTL LNSQQQQVFL GGQQQQQRGT LQSSLFPHSF RSWDHHHQTT SDNHHHHHNQ
301: ASPVMFASSS QYGSHGMMMM QGLSFPIHGE EPTQPNSSSS PPNSHL
101: PGSSSSEPNL ADTQTHFVAA NLDPEDAMKT FFPATTRGGG TNMNFQNYPH HHDADNIVSR TTTTTPNLSQ DLGLSLHPFQ GNNINSTVVP ETNNFATAHF
201: ETFGRISGWN HHDLTMTSSS SPSEQQEEQE RGNGGFMVNL HHHQPSMMTL LNSQQQQVFL GGQQQQQRGT LQSSLFPHSF RSWDHHHQTT SDNHHHHHNQ
301: ASPVMFASSS QYGSHGMMMM QGLSFPIHGE EPTQPNSSSS PPNSHL
001: MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KTAIDKLELG ETTTTTTRQE
101: PVNTKPESPT LVFQRENNDQ TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL GLSLHPFQGN NNTVVVPETN
201: NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
301: TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH L
101: PVNTKPESPT LVFQRENNDQ TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL GLSLHPFQGN NNTVVVPETN
201: NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
301: TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH L
Arabidopsis Description
TCP10Transcription factor TCP10 [Source:UniProtKB/Swiss-Prot;Acc:O82277]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.