CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88736
KRG88739
KRH05542
KRH05543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	KRG88736	AT2G22840.1	21245844
AT2G31070.1	KRG88739	AT2G22840.1	21245844
AT2G31070.1	KRH05542	AT2G22840.1	21245844
AT2G31070.1	KRH05543	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55819	Soybean	nucleus	90.03	78.68
KRH22307	Soybean	nucleus	65.98	55.81
KRH27017	Soybean	nucleus	64.95	55.1
PGSC0003DMT400024329	Potato	nucleus	40.21	37.62
Solyc07g053410.2.1	Tomato	cytosol	30.58	36.48
KRH27317	Soybean	nucleus	44.33	34.22
CDY10772	Canola	nucleus	40.21	33.81
CDY10771	Canola	nucleus	39.86	33.43
CDY24724	Canola	nucleus	39.86	33.33
Bra018280.1-P	Field mustard	nucleus	39.86	33.24
KRH21998	Soybean	nucleus	44.67	33.08
KRH26201	Soybean	nucleus	44.67	32.75
AT2G31070.1	Thale cress	nucleus	39.86	32.13
KRH55125	Soybean	nucleus	42.96	31.97
TraesCS3B01G164500.1	Wheat	nucleus	42.27	27.33
TraesCS3D01G146900.1	Wheat	nucleus	42.27	27.09
Zm00001d008919_P001	Maize	nucleus, plastid	39.18	26.82
TraesCS3A01G140100.1	Wheat	nucleus	41.92	26.7
Zm00001d039371_P001	Maize	mitochondrion	42.96	22.12
Os01t0213800-01	Rice	mitochondrion	42.27	21.24
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	42.27	20.85
Os01t0755500-01	Rice	cytosol, mitochondrion	31.27	20.4
KXG33398	Sorghum	nucleus	31.62	20.4
Zm00001d043423_P001	Maize	nucleus	30.24	20.28
OQU86111	Sorghum	plastid	42.96	19.94
KRH45058	Soybean	nucleus	20.27	16.62
KRH03150	Soybean	nucleus, plastid	21.99	16.45
KRG93654	Soybean	nucleus	20.62	16.04
KRH56798	Soybean	nucleus	21.31	15.86
KRH01308	Soybean	cytosol	20.62	15.62
KRH63215	Soybean	nucleus, plastid	19.93	14.99
KRH54711	Soybean	plastid	19.93	14.87
KRH42567	Soybean	nucleus	23.71	14.74
KRH58674	Soybean	nucleus	24.05	14.64
KRH11155	Soybean	nucleus	24.4	13.89
KRH21093	Soybean	nucleus	24.05	13.16
KRH56692	Soybean	nucleus	16.84	13.03
KRH03810	Soybean	nucleus	16.49	12.63
Zm00001d012725_P002	Maize	plastid	29.55	12.32
KRH63057	Soybean	nucleus	15.46	11.69
KRH54810	Soybean	nucleus	15.81	11.62
HORVU0Hr1G006890.2	Barley	cytosol	7.9	10.7
KRH01497	Soybean	plastid	13.06	10.27
KRH45185	Soybean	plastid	13.06	10.27
KRG91334	Soybean	nucleus	12.71	9.87
KRH35497	Soybean	nucleus	12.71	9.74
KRG93829	Soybean	nucleus, plastid	13.4	9.38
KRH18263	Soybean	plastid	13.4	9.31

Protein Annotations

MapMan:15.5.19	EMBL:ACUP02007317	EnsemblPlantsGene:GLYMA_12G121500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1LSA4	InterPro:IPR017887	EnsemblPlants:KRH25697	ProteinID:KRH25697	ProteinID:KRH25697.1	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000233CD5B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:13053141..13054090

Molecular Weight (calculated)

32087.9 Da

IEP (calculated)

6.970

GRAVY (calculated)

-0.756

Length

291 amino acids

Sequence
(BLAST)

001: MRTGVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD RPSKAVDWLI KKAKTSIDRL AELPPWHPPT HEEEKQNDAA
101: GSTPKAIGAF SSTHADTDPI NFQTNNSSED LGLSLHCFQD HPGLIHWQSQ QTGAHQTPPS NEHQIRTLFA GSTPGGFENH YQRSVTWNNE ATTTDHVNRL
201: GFILNSQPFI GQGSTSAYAQ SGGTLQSSFS FPMTSPSELH RPQPVNQPSI FDSRFVSDGL ADFCIPDRIQ GVEENHGVAS NRPSSSPSSI H

Best Arabidopsis Sequence Match ( AT3G15030.1 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.