CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92707
KRG97010
KRH34114
KRH68767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	KRG92707	AT5G28640.1	15326298
AT2G22840.1	KRG97010	AT5G28640.1	15326298
AT2G22840.1	KRH34114	AT5G28640.1	15326298
AT2G22840.1	KRH68767	AT5G28640.1	15326298
AT4G37740.1	KRG92707	AT5G28640.1	15326298
AT4G37740.1	KRG97010	AT5G28640.1	15326298
AT4G37740.1	KRH34114	AT5G28640.1	15326298
AT4G37740.1	KRH68767	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05542	Soybean	nucleus	90.32	90.17
KRG88739	Soybean	nucleus	88.48	89.23
KRH05543	Soybean	nucleus	87.48	86.04
VIT_18s0001g08650.t01	Wine grape	nucleus	61.6	61.09
GSMUA_Achr4P32310_001	Banana	nucleus	13.86	57.24
CDY55116	Canola	nucleus	24.87	52.84
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	52.09	52.26
Solyc04g077510.2.1	Tomato	nucleus	50.75	51.09
CDY66422	Canola	nucleus	25.71	49.2
CDX83200	Canola	nucleus	31.89	48.48
Bra017851.1-P	Field mustard	nucleus	35.23	47.2
CDX72654	Canola	nucleus	34.56	46.83
CDY29584	Canola	nucleus	31.72	46.57
Bra000575.1-P	Field mustard	nucleus	40.07	46.33
CDX75672	Canola	nucleus	34.56	45.9
Bra011781.1-P	Field mustard	nucleus	34.39	45.68
CDX69322	Canola	nucleus	34.39	44.69
AT2G22840.1	Thale cress	nucleus	39.23	44.34
Os03t0729500-01	Rice	nucleus	33.06	43.42
AT4G37740.1	Thale cress	nucleus	37.56	42.06
Os12t0484900-01	Rice	nucleus, plastid	28.38	41.16
TraesCS4D01G059600.1	Wheat	nucleus	37.56	38.93
HORVU4Hr1G037480.5	Barley	nucleus	21.04	38.41
TraesCS4A01G255000.1	Wheat	nucleus	38.56	38.06
EER90936	Sorghum	nucleus	38.06	37.94
HORVU4Hr1G010080.2	Barley	nucleus	38.4	37.77
TraesCS4B01G060000.1	Wheat	nucleus	38.4	37.64
KXG28671	Sorghum	nucleus	22.54	36.39
CDY21475	Canola	nucleus	29.22	35.21
Zm00001d006338_P002	Maize	mitochondrion	16.03	34.53
KRH27682	Soybean	nucleus	17.53	34.09
KRH30830	Soybean	nucleus	19.03	34.03
KRH32671	Soybean	nucleus	18.86	33.63
KRH67865	Soybean	nucleus	21.04	32.81
KRG96154	Soybean	nucleus	21.2	32.73
KRH23984	Soybean	nucleus	18.03	32.43
KRH77798	Soybean	nucleus	17.2	32.39
KRH29333	Soybean	nucleus	18.03	31.67
EER93679	Sorghum	nucleus	21.37	29.43
HORVU4Hr1G003440.12	Barley	nucleus	19.7	28.92
Os03t0674700-01	Rice	nucleus	20.53	28.87
KRH12524	Soybean	nucleus	17.36	28.49
TraesCS4A01G291500.1	Wheat	nucleus	19.37	28.43
KRH37478	Soybean	nucleus	16.86	27.67
KRH02627	Soybean	nucleus	17.36	27.59
TraesCS4D01G020300.1	Wheat	nucleus	19.03	27.47
KRH76368	Soybean	nucleus	15.36	27.46
KRH19281	Soybean	nucleus	17.53	27.34
KRH39656	Soybean	nucleus, plastid	14.86	26.41
Zm00001d002049_P001	Maize	cytosol, plastid	4.17	25.51
KRH64328	Soybean	nucleus	24.87	25.13
KRH53600	Soybean	nucleus	24.04	24.91
KRH47599	Soybean	nucleus	13.36	23.19
KRH06183	Soybean	nucleus	13.52	22.5
KRH76298	Soybean	nucleus	15.03	19.65
KRH65240	Soybean	nucleus	14.86	19.02

Protein Annotations

EntrezGene:100807610	MapMan:15.5.52.1	EnsemblPlantsGene:GLYMA_U028600	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K7M5R8
EnsemblPlants:KRG88736	ProteinID:KRG88736	ProteinID:KRG88736.1	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI00023D4C6A	InterPro:WRC_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_28:+:46124..51034

Molecular Weight (calculated)

65605.0 Da

IEP (calculated)

7.629

GRAVY (calculated)

-0.735

Length

599 amino acids

Sequence
(BLAST)

001: MDLGVVGLEG VVGSESCCVF GSSLASDPET KHKWYGSGVL KQERSAIASE DDEWRTSKVA KTDHDMSSAS KAMLFQQRNN SLLRSNATLF SDGHHHQSQM
101: LSFSSPKSES LLVDKASSNA TLPFSYHQLS SNTRNAGYSS GSISMHGALA GVRGPFTPSQ WMELEHQALI YKYITSNVPV PTHLIPIRKA LDSLGFCNFS
201: TGLLRPNALG WGGFHLGFSN NTDPEPGRCR RTDGKKWRCS RDAVVDQKYC ERHMNRGRHR SRKPVEGQLG HALTTTTTTN TPNASSNSTV VPRNTTTTTT
301: FAHNNVHHPL PPHSSQANTI NRMFTSNKEN NSTSERLQDP ALPMLPPTLE LKPKENNPFM IHKHHIPADE YSRNSNEFGL VTSDSLLNPT QKRSFTSSQK
401: DDSESQQQHS LRHFIDDSPK PQSHNHHHHH HSSSIWPELD SMQSDRTQLS ISIPISSSDF MSFTTSSPSN EKLTLSPLGH SRELDPIQME LGMGSGASNE
501: ANTRQANWIP ITWESSMGGP LGEVLNLSNN SNASDQCGKN NNTSALNLMK DGWDNNPPLG SSPTGVLQKS AFGSLSNSSA GSSPRAENNK EGATLCNAL

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.