Factsheet for Solyc04g077510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	96.13	95.81
VIT_18s0001g08650.t01	Wine grape	nucleus	63.53	62.58
GSMUA_Achr4P32310_001	Banana	nucleus	13.45	55.17
KRH05542	Soybean	nucleus	52.1	51.67
KRG88736	Soybean	nucleus	51.09	50.75
KRG88739	Soybean	nucleus	50.42	50.51
KRH05543	Soybean	nucleus	50.08	48.93
Os12t0484900-01	Rice	nucleus, plastid	30.25	43.58
Os03t0729500-01	Rice	nucleus	32.94	42.98
Solyc02g092070.2.1	Tomato	nucleus	39.83	41.73
KXG28671	Sorghum	nucleus	23.87	38.27
HORVU4Hr1G037480.5	Barley	nucleus	20.67	37.5
TraesCS4D01G059600.1	Wheat	nucleus	35.8	36.85
EER90936	Sorghum	nucleus	37.14	36.77
TraesCS4A01G255000.1	Wheat	nucleus	35.97	35.26
TraesCS4B01G060000.1	Wheat	nucleus	35.97	35.02
HORVU4Hr1G010080.2	Barley	nucleus	35.63	34.81
Solyc08g005430.2.1	Tomato	nucleus	20.17	33.71
Zm00001d006338_P002	Maize	mitochondrion	15.13	32.37
Solyc09g009200.1.1	Tomato	nucleus	20.67	32.28
Solyc12g096070.1.1	Tomato	nucleus	18.66	32.17
Solyc10g083510.1.1	Tomato	nucleus	20.67	31.62
Solyc08g075950.1.1	Tomato	nucleus	18.99	31.3
Solyc08g068760.1.1	Tomato	cytosol	8.07	30.97
Solyc07g041640.2.1	Tomato	nucleus	17.82	30.81
TraesCS4A01G291500.1	Wheat	nucleus	20.67	30.15
HORVU4Hr1G003440.12	Barley	nucleus	20.67	30.15
Os03t0674700-01	Rice	nucleus	21.18	29.58
Solyc08g079800.2.1	Tomato	nucleus	10.76	29.36
TraesCS4D01G020300.1	Wheat	nucleus	20.34	29.16
EER93679	Sorghum	nucleus	20.84	28.51
Zm00001d002049_P001	Maize	cytosol, plastid	4.54	27.55
Solyc08g083230.1.1	Tomato	nucleus	16.13	24.12
Solyc01g091540.1.1	Tomato	nucleus	16.97	24.05
Solyc03g082430.1.1	Tomato	nucleus	18.49	24.02

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4BUI8	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	EnsemblPlantsGene:Solyc04g077510.2
EnsemblPlants:Solyc04g077510.2.1	UniParc:UPI0002766658	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:62470040..62473212

Molecular Weight (calculated)

64115.3 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.643

Length

595 amino acids

Sequence
(BLAST)

001: MDFGGLDSGG GGVICSDNTT MFVASAETKQ KWYGSGGFNK HERSSVTEDE WNKESKLAKT SDDFSSTKAT MMFHQLPISH DNQQMLSFSA PNSQNHVTMP
101: YYNQHPSTAF ARNTSGYGSG ALNAGNMHGL IAGIKGPFTP SQWMELEHQA LIYKYITANI PIPPYLLNPI RKALESAGFS TFAGLRPNAL GWGAFHLGFS
201: NSNDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKPVEGQT GNSASGNNTG VTTTSAKLTN MPSAASAALA SGGGAAASNS LNLSHHNQLS
301: NLQPAGTNLS TTSPYLERSY TAKENFGERY SDTKGSSVVS ASVKEPQYSI QKAQNLYGLT SRAEFGLVCA DSLINPLNKN SSLVNCRGYV NSDVSDQESK
401: SQHHPLRQFM DEWPKNQSDQ SNVSWPDIDL QSDPTQLSIS IPLVTSDFMS STSSPANDKL TASPRRSREH EATQMGLGIG TIISEHNQRQ GSWIPISWES
501: SLGGPLGEVL HSTNSSSGDC KNKSALNLLT EGWDRSPRMG SSPTGVLQKS SFGSLSNSSA GSSPRAEHSK TTNEGSSLCN GLLGTTLMNP TLPAM

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.