Factsheet for Solyc03g082430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008352	Potato	nucleus	89.52	91.31
Solyc08g068760.1.1	Tomato	cytosol	26.86	79.35
Bra022667.1-P	Field mustard	nucleus	22.49	29.68
CDY28823	Canola	nucleus	22.49	29.68
CDY51791	Canola	nucleus	20.74	29.05
AT5G53660.1	Thale cress	nucleus	23.14	29.04
KRH64328	Soybean	nucleus	33.62	25.97
Solyc08g079800.2.1	Tomato	nucleus	12.01	25.23
Solyc12g096070.1.1	Tomato	nucleus	18.78	24.93
KRH53600	Soybean	nucleus	31.44	24.91
Solyc09g009200.1.1	Tomato	nucleus	19.87	23.88
Solyc07g041640.2.1	Tomato	nucleus	17.9	23.84
Solyc08g005430.2.1	Tomato	nucleus	17.9	23.03
Solyc08g075950.1.1	Tomato	nucleus	18.12	22.99
Solyc10g083510.1.1	Tomato	nucleus	18.56	21.85
Solyc08g083230.1.1	Tomato	nucleus	18.12	20.85
VIT_16s0098g01080.t01	Wine grape	nucleus	24.45	19.44
Solyc02g092070.2.1	Tomato	nucleus	23.14	18.66
Solyc04g077510.2.1	Tomato	nucleus	24.02	18.49
Solyc01g091540.1.1	Tomato	nucleus	16.59	18.1

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4BI19	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF24	SMART:SM00951	EnsemblPlantsGene:Solyc03g082430.1
EnsemblPlants:Solyc03g082430.1.1	UniParc:UPI0002768564	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:52356213..52357948

Molecular Weight (calculated)

50427.4 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.632

Length

458 amino acids

Sequence
(BLAST)

001: MGHHQDVHCS DGGANKMLCS TDEASLLPPP PSAPVVRSLQ PFDVATNSQG GMTTTLGYPF TWAQWKELER QAMIYKYMVS AMSVPPDLLL SISSEASHTT
101: SATGSVQGRY TTNIRDLEPG RCKRTDGKKW RCSRDVAPHQ KYCERHMHRG RPRSRKHVEV HAGVSNASDN KKTRLQAESI PTTTASQINN RSTKQPLRST
201: FQQIQNPLSF HDDKIGGNGI ISDSSFNELH RSSGWMMEGE LVAKADSGHQ WQHLMDSNAG YSAHGYREEA LNFLVSRDME RTEHTGEFNF MTNPEFVKDT
301: SRDLINGWSN DNVYNNSNNE NLEASLWPSL GDISSSSLAL SIAMAAGDVL DEDMGLDSRF MNTNQHKFWE NSFPFASGGP LAEVLHPSSS FSLGDNPTSS
401: YTSNGDSISP AATTVSSPSG VLQKTMFSHS DGSVCNSPIL AAPSNNITPE TVQFQWLR

Best Arabidopsis Sequence Match ( AT5G53660.1 )
(BLAST)

001: MDFLKVSDKT TIPYRSDSLF SLNQQQYKES SFGFRDMEIH PHPTPYAGNG LLGCYYYYPF TNAQLKELER QAMIYKYMIA SIPVPFDLLV SSPSSASPCN
101: NKNIAGDLEP GRCRRTDGKK WRCAKEVVSN HKYCEKHLHR GRPRSRKHVE PPYSRPNNNG GSVKNRDLKK LPQKLSSSSI KDKTLEPMEV SSSISNYRDS
201: RGSEKFTVLA TTEQENKYLN FIDVWSDGVR SSEKQSTTST PVSSSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGSEDHHGYG PYGVTSSLEE
301: MSSWLAPMST TPGGPLAEIL RPSTNLAISG DIESYSLMET PTPSSSPSRV MKKMTSSVSD ESSQV

Arabidopsis Description

GRF7Growth-regulating factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.