Factsheet for AT5G53660.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51791	Canola	nucleus	70.68	78.9
Bra022667.1-P	Field mustard	nucleus	73.7	77.52
CDY28823	Canola	nucleus	73.42	77.23
Solyc08g068760.1.1	Tomato	cytosol	15.07	35.48
AT3G52910.1	Thale cress	nucleus	26.85	25.79
AT2G36400.1	Thale cress	nucleus	27.12	24.87
PGSC0003DMT400008352	Potato	nucleus	29.04	23.61
AT2G06200.2	Thale cress	endoplasmic reticulum, plasma membrane	18.08	23.32
Solyc03g082430.1.1	Tomato	nucleus	29.04	23.14
KRH64328	Soybean	nucleus	33.7	20.74
KRH53600	Soybean	nucleus	32.6	20.59
AT3G13960.1	Thale cress	nucleus	20.82	19.14
AT2G22840.1	Thale cress	nucleus	26.58	18.3
AT4G37740.1	Thale cress	nucleus	26.58	18.13
AT4G24150.1	Thale cress	nucleus	23.84	17.65
VIT_16s0098g01080.t01	Wine grape	nucleus	26.85	17.01
AT2G45480.3	Thale cress	nucleus	18.63	15.78

Protein Annotations

MapMan:15.5.52.1	EntrezGene:835447	UniProt:A0A178UMM3	EMBL:AB493791	ProteinID:AED96392.1	EMBL:AK176109
ArrayExpress:AT5G53660	EnsemblPlantsGene:AT5G53660	RefSeq:AT5G53660	TAIR:AT5G53660	RefSeq:AT5G53660-TAIR-G	EnsemblPlants:AT5G53660.1
TAIR:AT5G53660.1	Symbol:AtGRF7	ProteinID:BAB09742.1	EMBL:BT010882	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218	GO:GO:0032502
GO:GO:0048366	GO:GO:0080167	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
RefSeq:NP_200177.1	ProteinID:OAO94740.1	PFAM:PF08879	PFAM:PF08880	PO:PO:0000013	PO:PO:0000037
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007611
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009031	PO:PO:0009046	PO:PO:0009047
PO:PO:0020144	PO:PO:0025022	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF41
UniProt:Q9FJB8	SMART:SM00951	UniParc:UPI00000A8CA8	InterPro:WRC_dom	SEG:seg	:

Description

GRF7Growth-regulating factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJB8]

Coordinates

chr5:+:21794177..21796092

Molecular Weight (calculated)

40412.5 Da

IEP (calculated)

8.184

GRAVY (calculated)

-0.665

Length

365 amino acids

Sequence
(BLAST)

001: MDFLKVSDKT TIPYRSDSLF SLNQQQYKES SFGFRDMEIH PHPTPYAGNG LLGCYYYYPF TNAQLKELER QAMIYKYMIA SIPVPFDLLV SSPSSASPCN
101: NKNIAGDLEP GRCRRTDGKK WRCAKEVVSN HKYCEKHLHR GRPRSRKHVE PPYSRPNNNG GSVKNRDLKK LPQKLSSSSI KDKTLEPMEV SSSISNYRDS
201: RGSEKFTVLA TTEQENKYLN FIDVWSDGVR SSEKQSTTST PVSSSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGSEDHHGYG PYGVTSSLEE
301: MSSWLAPMST TPGGPLAEIL RPSTNLAISG DIESYSLMET PTPSSSPSRV MKKMTSSVSD ESSQV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.